hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-16282380/chunk_1/iprscan-20080812-16282380.nocrc
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Query sequence: hj04578
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00249.21.ls   Myb-like DNA-binding domain             110.0    6.3e-30   2
PF00249.21.fs   Myb-like DNA-binding domain             106.6    6.5e-29   2

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00249.21.fs     1/2     447   492 ..     1    65 []    47.1  7.1e-12
PF00249.21.ls     1/2     447   492 ..     1    65 []    48.7  1.8e-11
PF00249.21.fs     2/2     630   675 ..     1    65 []    59.6  2.9e-15
PF00249.21.ls     2/2     630   675 ..     1    65 []    61.3    3e-15

Alignments of top-scoring domains:
PF00249.21.fs: domain 1 of 2, from 447 to 492: score 47.1, E = 7.1e-12
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      ++ W+++E+e + e +++h+k+           + +Ia  l+     
     hj04578   447    MNMWSEQEKETFREKFMQHPKN-----------FGLIASFLE----- 477  

                   nvlgrtaeqcklryykyk<-*
                      ++t+ +c+l+yy +k   
     hj04578   478 ---RKTVAECVLYYYLTK    492  

PF00249.21.ls: domain 1 of 2, from 447 to 492: score 48.7, E = 1.8e-11
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      ++ W+++E+e + e +++h+k+           + +Ia  l+     
     hj04578   447    MNMWSEQEKETFREKFMQHPKN-----------FGLIASFLE----- 477  

                   nvlgrtaeqcklryykyk<-*
                      ++t+ +c+l+yy +k   
     hj04578   478 ---RKTVAECVLYYYLTK    492  

PF00249.21.fs: domain 2 of 2, from 630 to 675: score 59.6, E = 2.9e-15
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      ++rWt+eE+e  ++++ +hG +           W+ Ia+++g     
     hj04578   630    SSRWTEEEMETAKKGLLEHGRN-----------WSAIARMVG----- 660  

                   nvlgrtaeqcklryykyk<-*
                      ++t++qck++y +yk   
     hj04578   661 ---SKTVSQCKNFYFNYK    675  

PF00249.21.ls: domain 2 of 2, from 630 to 675: score 61.3, E = 3e-15
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      ++rWt+eE+e  ++++ +hG +           W+ Ia+++g     
     hj04578   630    SSRWTEEEMETAKKGLLEHGRN-----------WSAIARMVG----- 660  

                   nvlgrtaeqcklryykyk<-*
                      ++t++qck++y +yk   
     hj04578   661 ---SKTVSQCKNFYFNYK    675  

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