hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-16282380/chunk_1/iprscan-20080812-16282380.nocrc
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Query sequence: hj04578
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00717                                                 100.8    1.6e-25   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00717    1/2     446   494 ..     1    53 []    37.2  2.3e-06
SM00717    2/2     629   677 ..     1    53 []    63.6  2.4e-14

Alignments of top-scoring domains:
SM00717: domain 1 of 2, from 446 to 494: score 37.2, E = 2.3e-06
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                        + W+e+E e ++e   +++    +++ +Ia+ l  +t+ +c++++
     hj04578   446    VMNMWSEQEKETFREKFMQHP----KNFGLIASFLERKTVAECVLYY 488  

                   rnllkp<-*
                   +  +k    
     hj04578   489 YLTKKN    494  

SM00717: domain 2 of 2, from 629 to 677: score 63.6, E = 2.4e-14
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                      +  +WteeE e  ++++ ++G    ++W++Ia++++++t+ qc++++
     hj04578   629    ESSRWTEEEMETAKKGLLEHG----RNWSAIARMVGSKTVSQCKNFY 671  

                   rnllkp<-*
                    n++k+   
     hj04578   672 FNYKKR    677  

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