hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-15452173/chunk_1/iprscan-20090618-15452173.nocrc
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Query sequence: hj04936
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF06466.2.ls   PCAF (P300/CBP-associated factor) N-te   628.5   5.3e-186   1
PF06466.2.fs   PCAF (P300/CBP-associated factor) N-te   626.7   1.9e-185   1
PF00439.15.ls  Bromodomain                              144.1    3.5e-40   1
PF00439.15.fs  Bromodomain                              142.1    1.4e-39   1
PF00583.14.fs  Acetyltransferase (GNAT) family           55.1      8e-18   1
PF00583.14.ls  Acetyltransferase (GNAT) family           57.1    5.4e-14   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF06466.2.fs     1/1      86   338 ..     1   276 []   626.7 1.9e-185
PF06466.2.ls     1/1      86   338 ..     1   276 []   628.5 5.3e-186
PF00583.14.fs    1/1     557   634 ..     1    80 []    55.1    8e-18
PF00583.14.ls    1/1     557   634 ..     1    80 []    57.1  5.4e-14
PF00439.15.ls    1/1     739   826 ..     1    92 []   144.1  3.5e-40
PF00439.15.fs    1/1     739   826 ..     1    92 []   142.1  1.4e-39

Alignments of top-scoring domains:
PF06466.2.fs: domain 1 of 1, from 86 to 338: score 626.7, E = 1.9e-185
                   *->ikqRkaqvrnlPlakKlekLgvfsACkAeesCkCnGwkPvLnpedet
                      i+++kaq+r++P+akKlekLgv+sACkAeesCkCnGwk   np++++
     hj04936    86    IAVKKAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWK---NPNPSP 129  

                   verRAtRAEREnDFAPmtrDLeqlYgselieeCRntsCgHsLasHvshLe
                   +++R               DL+q+ +++l+e+CR  sC+H+La+HvshLe
     hj04936   130 TPPR--------------ADLQQI-IVSLTESCR--SCSHALAAHVSHLE 162  

                   nvSeeeldrLlgaiiDlenLfmslhkiePsdedtkqvYfyLfkLLrkciL
                   nvSeee++rLlg+++D+e+Lf+++hk+e  d+dtkqvYfyLfkLLrk+iL
     hj04936   163 NVSEEEMNRLLGIVLDVEYLFTCVHKEE--DADTKQVYFYLFKLLRKSIL 210  

                   qrlkPVveGsLGkkPpFEkpsieqgVLnfvfykfshLdnaErQtlaElak
                   qr+kPVveGsL+kkPpFEkpsieqgV+nfv+ykfshL+ +ErQt++Elak
     hj04936   211 QRGKPVVEGSLEKKPPFEKPSIEQGVNNFVQYKFSHLPAKERQTIVELAK 260  

                   lFLnelNhWkLEgpsqrrdrlnveLdvskYkinYtRwlcYcnvPafcdSL
                   +FLn++N+W+LE+psqrr+r++++ d+s+Yk+nYtRwlcYcnvP+fcdSL
     hj04936   261 MFLNRINYWHLEAPSQRRLRSPND-DISGYKENYTRWLCYCNVPQFCDSL 309  

                   kqyeTtdVFGrtllrtvftvlrrqLlekn<-*
                   ++yeTt+VFGrtllr+vftv+rrqLle++   
     hj04936   310 PRYETTQVFGRTLLRSVFTVMRRQLLEQA    338  

PF06466.2.ls: domain 1 of 1, from 86 to 338: score 628.5, E = 5.3e-186
                   *->ikqRkaqvrnlPlakKlekLgvfsACkAeesCkCnGwkPvLnpedet
                      i+++kaq+r++P+akKlekLgv+sACkAeesCkCnGwk   np++++
     hj04936    86    IAVKKAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWK---NPNPSP 129  

                   verRAtRAEREnDFAPmtrDLeqlYgselieeCRntsCgHsLasHvshLe
                   +++R               DL+q+ +++l+e+CR  sC+H+La+HvshLe
     hj04936   130 TPPR--------------ADLQQI-IVSLTESCR--SCSHALAAHVSHLE 162  

                   nvSeeeldrLlgaiiDlenLfmslhkiePsdedtkqvYfyLfkLLrkciL
                   nvSeee++rLlg+++D+e+Lf+++hk+e  d+dtkqvYfyLfkLLrk+iL
     hj04936   163 NVSEEEMNRLLGIVLDVEYLFTCVHKEE--DADTKQVYFYLFKLLRKSIL 210  

                   qrlkPVveGsLGkkPpFEkpsieqgVLnfvfykfshLdnaErQtlaElak
                   qr+kPVveGsL+kkPpFEkpsieqgV+nfv+ykfshL+ +ErQt++Elak
     hj04936   211 QRGKPVVEGSLEKKPPFEKPSIEQGVNNFVQYKFSHLPAKERQTIVELAK 260  

                   lFLnelNhWkLEgpsqrrdrlnveLdvskYkinYtRwlcYcnvPafcdSL
                   +FLn++N+W+LE+psqrr+r++++ d+s+Yk+nYtRwlcYcnvP+fcdSL
     hj04936   261 MFLNRINYWHLEAPSQRRLRSPND-DISGYKENYTRWLCYCNVPQFCDSL 309  

                   kqyeTtdVFGrtllrtvftvlrrqLlekn<-*
                   ++yeTt+VFGrtllr+vftv+rrqLle++   
     hj04936   310 PRYETTQVFGRTLLRSVFTVMRRQLLEQA    338  

PF00583.14.fs: domain 1 of 1, from 557 to 634: score 55.1, E = 8e-18
                   *->lvaeedgelvGfaglspide..vaeieglaVdpeyRgkGiGtaLlea
                      l+  +dg+++G +++++++ ++ +ei ++aV  + + kG+Gt+L+++
     hj04936   557    LALIKDGRVIGGICFRMFPSqgFTEIVFCAVTSNEQVKGYGTHLMNH 603  

                   leeyareelGlkrieleveedNeaAialYeklGFk<-*
                   l ey  +    + i  + +++ e Ai++++k+GF    
     hj04936   604 LKEYHIK----HDILNFLTYADEYAIGYFKKQGFS    634  

PF00583.14.ls: domain 1 of 1, from 557 to 634: score 57.1, E = 5.4e-14
                   *->lvaeedgelvGfaglspide..vaeieglaVdpeyRgkGiGtaLlea
                      l+  +dg+++G +++++++ ++ +ei ++aV  + + kG+Gt+L+++
     hj04936   557    LALIKDGRVIGGICFRMFPSqgFTEIVFCAVTSNEQVKGYGTHLMNH 603  

                   leeyareelGlkrieleveedNeaAialYeklGFk<-*
                   l ey  +    + i  + +++ e Ai++++k+GF    
     hj04936   604 LKEYHIK----HDILNFLTYADEYAIGYFKKQGFS    634  

PF00439.15.ls: domain 1 of 1, from 739 to 826: score 144.1, E = 3.5e-40
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      l+++l+++l ++++h   a+pf++pV+    e+P+YYe+I+ PMDLk
     hj04936   739    LYSTLKSILQQVKSHQ-SAWPFMEPVKRT--EAPGYYEVIRFPMDLK 782  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   T+ ++lkn++Y +s + F+aD++++f+N+k YN+p+se+yk+A+    
     hj04936   783 TMSERLKNRYY-VSKKLFMADLQRVFTNCKEYNPPESEYYKCANI    826  

PF00439.15.fs: domain 1 of 1, from 739 to 826: score 142.1, E = 1.4e-39
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      l+++l+++l ++++h   a+pf++pV+    e+P+YYe+I+ PMDLk
     hj04936   739    LYSTLKSILQQVKSHQ-SAWPFMEPVKRT--EAPGYYEVIRFPMDLK 782  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   T+ ++lkn++Y +s + F+aD++++f+N+k YN+p+se+yk+A+    
     hj04936   783 TMSERLKNRYY-VSKKLFMADLQRVFTNCKEYNPPESEYYKCANI    826  

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