hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-15452173/chunk_1/iprscan-20090618-15452173.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hj04936
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00297                                                 163.6      2e-44   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00297    1/1     732   840 ..     1   118 []   163.6    2e-44

Alignments of top-scoring domains:
SM00297: domain 1 of 1, from 732 to 840: score 163.6, E = 2e-44
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      +p++  +l++ lk++l +++sh        + awpF+epv++ e  +
     hj04936   732    EPRdPDQLYSTLKSILQQVKSH--------QSAWPFMEPVKRTE--A 768  

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                   P+Yy++I+ PMDLkt+ ++l+n++Y+s + F+aD++++f+N+k YN+p+s
     hj04936   769 PGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPES 818  

                   evykdAkkLeklfeeklkelpp<-*
                   e+yk+A+ Lek+f +k+ke+     
     hj04936   819 EYYKCANILEKFFFSKIKEAGL    840  

//