hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-15522286/chunk_1/iprscan-20090618-15522286.nocrc
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Query sequence: hj05054
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00168.20.fs C2 domain                                      259.4    1.4e-76   2
PF00168.20.ls C2 domain                                      263.4    4.2e-76   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00168.20.fs   1/2     166   252 ..     1    88 []   130.0  4.3e-38
PF00168.20.ls   1/2     166   252 ..     1    88 []   132.0  1.6e-36
PF00168.20.fs   2/2     297   385 ..     1    88 []   129.5  6.2e-38
PF00168.20.ls   2/2     297   385 ..     1    88 []   131.5  2.2e-36

Alignments of top-scoring domains:
PF00168.20.fs: domain 1 of 2, from 166 to 252: score 130.0, E = 4.3e-38
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl
                      L V +i+A  Lp+ D ++g+sDPYVkv+l++dkk +k+ Tkv++ktl
     hj05054   166    LLVGIIQAAELPALD-MGGTSDPYVKVFLLPDKK-KKFETKVHRKTL 210  

                   NPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   NPv+NE+FtF vp+ +l  +tL+  VyD+drf+++d++Ge++   
     hj05054   211 NPVFNEQFTFKVPYSELGGkTLVMAVYDFDRFSKHDIIGEFK    252  

PF00168.20.ls: domain 1 of 2, from 166 to 252: score 132.0, E = 1.6e-36
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl
                      L V +i+A  Lp+ D ++g+sDPYVkv+l++dkk +k+ Tkv++ktl
     hj05054   166    LLVGIIQAAELPALD-MGGTSDPYVKVFLLPDKK-KKFETKVHRKTL 210  

                   NPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   NPv+NE+FtF vp+ +l  +tL+  VyD+drf+++d++Ge++   
     hj05054   211 NPVFNEQFTFKVPYSELGGkTLVMAVYDFDRFSKHDIIGEFK    252  

PF00168.20.fs: domain 2 of 2, from 297 to 385: score 129.5, E = 6.2e-38
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt
                      L+V ++eAknL+++D ++g+sDPYVk++l + +k+ +kkkT ++k+t
     hj05054   297    LTVVILEAKNLKKMD-VGGLSDPYVKIHLMQNGKRlKKKKTTIKKNT 342  

                   lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   lNP++NE+F Fevp+++ q+  ++++V Dyd++g++d +G+v    
     hj05054   343 LNPYYNESFSFEVPFEQIQKvQVVVTVLDYDKIGKNDAIGKVF    385  

PF00168.20.ls: domain 2 of 2, from 297 to 385: score 131.5, E = 2.2e-36
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt
                      L+V ++eAknL+++D ++g+sDPYVk++l + +k+ +kkkT ++k+t
     hj05054   297    LTVVILEAKNLKKMD-VGGLSDPYVKIHLMQNGKRlKKKKTTIKKNT 342  

                   lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   lNP++NE+F Fevp+++ q+  ++++V Dyd++g++d +G+v    
     hj05054   343 LNPYYNESFSFEVPFEQIQKvQVVVTVLDYDKIGKNDAIGKVF    385  

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