hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-15522286/chunk_1/iprscan-20090618-15522286.nocrc
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Query sequence: hj05054
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00239                                                 185.8      4e-51   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00239    1/2     165   267 ..     1    92 []    91.7  8.8e-23
SM00239    2/2     296   410 ..     1    92 []    94.1  1.6e-23

Alignments of top-scoring domains:
SM00239: domain 1 of 2, from 165 to 267: score 91.7, E = 8.8e-23
                   *->tLtvkiisArnLp........DPYVkvs.........kTkvvkktls
                      +L v ii+A  Lp  + ++++DPYVkv+  ++++++  Tkv++ktl 
     hj05054   165    QLLVGIIQAAELPaldmggtsDPYVKVFllpdkkkkfETKVHRKTL- 210  

                   gfNPvWnEesetFeFevpp.....s.LeieVyDk......dfiGrvtipp
                     NPv+nE   +F+F+vp ++ ++++L+  VyD+++ +++d+iG++ +p 
     hj05054   211 --NPVFNE---QFTFKVPYselggKtLVMAVYDFdrfskhDIIGEFKVP- 254  

                   nnahqhsadglihlsell.ggrh.kl<-*
                                +++++ g+ ++++   
     hj05054   255 -------------MNTVDfGHVTeEW    267  

SM00239: domain 2 of 2, from 296 to 410: score 94.1, E = 1.6e-23
                   *->tLtvkiisArnLp........DPYVkvs...........kTkvvkkt
                      +Ltv i++A+nL++ + ++ +DPYVk++  +++++ +++kT ++k+t
     hj05054   296    KLTVVILEAKNLKkmdvgglsDPYVKIHlmqngkrlkkkKTTIKKNT 342  

                   lsgfNPvWnEesetFeFevpp.....s.LeieVyDk......dfiGrvti
                   l   NP++nE   +F Fevp ++ ++ +++++V D+++ +++d iG+v +
     hj05054   343 L---NPYYNE---SFSFEVPFeqiqkVqVVVTVLDYdkigknDAIGKVFV 386  

                   ppnnahqhsadg..lihlsell.ggrh.kl<-*
                   +       +++g +l+h+s++l ++r++     
     hj05054   387 G------YNSTGaeLRHWSDMLaNPRRpIA    410  

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