hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-16532694/chunk_1/iprscan-20080812-16532694.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj05056 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00082.12.ls Subtilase family 456.3 3.6e-134 1 PF00082.12.fs Subtilase family 454.5 1.3e-133 1 PF01483.10.fs Proprotein convertase P-domain 105.1 3.7e-29 1 PF01483.10.ls Proprotein convertase P-domain 107.1 4.9e-29 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00082.12.fs 1/1 112 413 .. 1 352 [] 454.5 1.3e-133 PF00082.12.ls 1/1 112 413 .. 1 352 [] 456.3 3.6e-134 PF01483.10.fs 1/1 475 567 .. 1 94 [] 105.1 3.7e-29 PF01483.10.ls 1/1 475 567 .. 1 94 [] 107.1 4.9e-29 Alignments of top-scoring domains: PF00082.12.fs: domain 1 of 1, from 112 to 413: score 454.5, E = 1.3e-133 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->yggsdinapaaWdrgytGkGvvvaViDTGidtnHpDLkgnyiggkki ++ d+++ ++W++g+tGkGvv+ V+D+G+++nH+D+ +ny hj05056 112 LPKLDLHVIPVWQKGITGKGVVITVLDDGLEWNHTDIYANY------ 152 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tsndpegsyDfndndsnpnDPgPryddsddngHGTHVAGtiAAvgnNsig dpe+syDfndnd DP+Pryd ++ n+HGT++AG+iA ++nN+++ hj05056 153 ---DPEASYDFNDNDH---DPFPRYDPTNENKHGTRCAGEIAMQANNHKC 196 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx vvGVApgAkllavrvLdgpngsgtseleaasywaasaviagiewaandng +vGVA+++k++++r+Ldg +++++ +ea+ + g+++ + hj05056 197 GVGVAYNSKVGGIRMLDG-IVTDA--IEAS--------SIGFNPGH---- 231 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx advinmSlGggfpgdsGstsdgpgdlakkAllegAvnyArvnkGsifVaA +d++++S+G p d+G+t+ gpg+la+kA+ g v+++r++kGsifV+A hj05056 232 VDIYSASWG---PNDDGKTVEGPGRLAQKAFEYG-VKQGRQGKGSIFVWA 277 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx AGNeGsdasdscgcdgnykfrslvkKvvsPAnsiytnvIaVGAtdqn... +GN+G++ +d+c+cdg ++ siyt I++++ +q++ + hj05056 278 SGNGGRQ-GDNCDCDG-------------YTDSIYT--ISISSASQQgls 311 RF xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx ....fssnsglavdisAPGd.sevnIlSTdlqdsgaliynnggyaslsGT + ++++s+la+ +s+ Gd ++ I+S+dl +n+++++++GT hj05056 312 pwyaEKCSSTLATSYSS-GDyTDQRITSADL--------HNDCTETHTGT 352 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx SMAaPhvAGvaALllsanspnltWrdvqylsvlsesaaelraalentats S++aP++AG++AL+l+an pnltWrd+q+l+v+ +s+ +a+ +++++ hj05056 353 SASAPLAAGIFALALEAN-PNLTWRDMQHLVVW-TSEYDPLANNPGWKKN 400 RF xxxxxxxxxxxxx lggagisnlfGyG<-* ++g +++++G+G hj05056 401 GAGLMVNSRIGFG 413 PF00082.12.ls: domain 1 of 1, from 112 to 413: score 456.3, E = 3.6e-134 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->yggsdinapaaWdrgytGkGvvvaViDTGidtnHpDLkgnyiggkki ++ d+++ ++W++g+tGkGvv+ V+D+G+++nH+D+ +ny hj05056 112 LPKLDLHVIPVWQKGITGKGVVITVLDDGLEWNHTDIYANY------ 152 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tsndpegsyDfndndsnpnDPgPryddsddngHGTHVAGtiAAvgnNsig dpe+syDfndnd DP+Pryd ++ n+HGT++AG+iA ++nN+++ hj05056 153 ---DPEASYDFNDNDH---DPFPRYDPTNENKHGTRCAGEIAMQANNHKC 196 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx vvGVApgAkllavrvLdgpngsgtseleaasywaasaviagiewaandng +vGVA+++k++++r+Ldg +++++ +ea+ + g+++ + hj05056 197 GVGVAYNSKVGGIRMLDG-IVTDA--IEAS--------SIGFNPGH---- 231 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx advinmSlGggfpgdsGstsdgpgdlakkAllegAvnyArvnkGsifVaA +d++++S+G p d+G+t+ gpg+la+kA+ g v+++r++kGsifV+A hj05056 232 VDIYSASWG---PNDDGKTVEGPGRLAQKAFEYG-VKQGRQGKGSIFVWA 277 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx AGNeGsdasdscgcdgnykfrslvkKvvsPAnsiytnvIaVGAtdqn... +GN+G++ +d+c+cdg ++ siyt I++++ +q++ + hj05056 278 SGNGGRQ-GDNCDCDG-------------YTDSIYT--ISISSASQQgls 311 RF xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx ....fssnsglavdisAPGd.sevnIlSTdlqdsgaliynnggyaslsGT + ++++s+la+ +s+ Gd ++ I+S+dl +n+++++++GT hj05056 312 pwyaEKCSSTLATSYSS-GDyTDQRITSADL--------HNDCTETHTGT 352 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx SMAaPhvAGvaALllsanspnltWrdvqylsvlsesaaelraalentats S++aP++AG++AL+l+an pnltWrd+q+l+v+ +s+ +a+ +++++ hj05056 353 SASAPLAAGIFALALEAN-PNLTWRDMQHLVVW-TSEYDPLANNPGWKKN 400 RF xxxxxxxxxxxxx lggagisnlfGyG<-* ++g +++++G+G hj05056 401 GAGLMVNSRIGFG 413 PF01483.10.fs: domain 1 of 1, from 475 to 567: score 105.1, E = 3.7e-29 *->vehvqVrvdItHtyrGdLrieLvSPsGtrsvLlnrrlskDddgsrgf +ehvq +I++++rGdL ++L+S +Gt vLl r +D++ gf hj05056 475 LEHVQFEATIEYSRRGDLHVTLTSAAGTSTVLLAER-ERDTSP-NGF 519 lkwtFtlnafwGEqanGtWtLeVtDtargd.stGylksWsLtlfgegk<- +w F++++ wGE++ GtWtL++tD+++ +++G++ +W+L+l+g+++ hj05056 520 KNWDFMSVHTWGENPIGTWTLRITDMSGRIqNEGRIVNWKLILHGTSS 567 * hj05056 - - PF01483.10.ls: domain 1 of 1, from 475 to 567: score 107.1, E = 4.9e-29 *->vehvqVrvdItHtyrGdLrieLvSPsGtrsvLlnrrlskDddgsrgf +ehvq +I++++rGdL ++L+S +Gt vLl r +D++ gf hj05056 475 LEHVQFEATIEYSRRGDLHVTLTSAAGTSTVLLAER-ERDTSP-NGF 519 lkwtFtlnafwGEqanGtWtLeVtDtargd.stGylksWsLtlfgegk<- +w F++++ wGE++ GtWtL++tD+++ +++G++ +W+L+l+g+++ hj05056 520 KNWDFMSVHTWGENPIGTWTLRITDMSGRIqNEGRIVNWKLILHGTSS 567 * hj05056 - - //