hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-16590150/chunk_1/iprscan-20080812-16590150.nocrc
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Query sequence: hj05106
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01403.10.ls Sema domain                                    830.9   6.4e-247   1
PF01403.10.fs Sema domain                                    828.9   2.5e-246   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01403.10.fs   1/1      80   521 ..     1   490 []   828.9 2.5e-246
PF01403.10.ls   1/1      80   521 ..     1   490 []   830.9 6.4e-247

Alignments of top-scoring domains:
PF01403.10.fs: domain 1 of 1, from 80 to 521: score 828.9, E = 2.5e-246
                   *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek
                      +r+ll+ded++r+yVG ++h+++Ln++++s+  ++ + Wp+s  ++k
     hj05106    80    YRILLMDEDQDRIYVGSKDHILSLNINNISQE-ALSVFWPAS--TIK 123  

                   ceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl
                   +eeCkm+Gk+p    + C Nf+rV+q+ n+thLyvCG++aF+PvCt++n+
     hj05106   124 VEECKMAGKDP---THGCGNFVRVIQTFNRTHLYVCGSGAFSPVCTYLNR 170  

                   gdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL
                   g+rse       d++F++   k+esGkgrC+++P  n++sv++ +  +eL
     hj05106   171 GRRSE-------DQVFMI-DSKCESGKGRCSFNPNVNTVSVMI-N--EEL 209  

                   YsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy
                   +sG+++D      F+G+d+aI+Rsl+++   rT+qh+skwl eP+FVd++
     hj05106   210 FSGMYID------FMGTDAAIFRSLTKRNAVRTDQHNSKWLSEPMFVDAH 253  

                   pipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGrryl
                   +ip+  +++D kVYFFF E+ ++ +  ++k+i+s++aR+C nD GG r+l
     hj05106   254 VIPDGTDPNDAKVYFFFKEKLTDNN-RSTKQIHSMIARICPNDTGGLRSL 302  

                   elnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreLgIs
                   + nkWTTFLKARL+CSv +e+g++ ++F+eL++vfll t+++        
     hj05106   303 V-NKWTTFLKARLVCSVTDEDGPE-THFDELEDVFLLETDNP-------- 342  

                   erdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqssEg
                    r++++YG+Fttss++++g    SAVC++++sdI++vF nGpf+h+  Eg
     hj05106   343 -RTTLVYGIFTTSSSVFKG----SAVCVYHLSDIQTVF-NGPFAHK--EG 384  

                   pnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfikshpLm
                   pn+++  y+g ++PyPRPG+Cp++ ++pn+++tk++PDd+++fi++hpLm
     hj05106   385 PNHQLISYQG-RIPYPRPGTCPGGAFTPNMRTTKEFPDDVVTFIRNHPLM 433  

                   devvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTddGt
                   +++++P+h+rPl v+++++y++T+IaVd rV a+dG+ Y+VlFlGTd+Gt
     hj05106   434 YNSIYPIHKRPLIVRIGTDYKYTKIAVD-RVNAADGR-YHVLFLGTDRGT 481  

                   vlKkvvvlsrsss.syeevvleelqvfkdpriePvqnleisskq<-*
                   v+ kvvvl+ + s s +e++leel+vfk +  +P+++++issk+   
     hj05106   482 VQ-KVVVLPTNNSvS-GELILEELEVFKNH--APITTMKISSKK    521  

PF01403.10.ls: domain 1 of 1, from 80 to 521: score 830.9, E = 6.4e-247
                   *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek
                      +r+ll+ded++r+yVG ++h+++Ln++++s+  ++ + Wp+s  ++k
     hj05106    80    YRILLMDEDQDRIYVGSKDHILSLNINNISQE-ALSVFWPAS--TIK 123  

                   ceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl
                   +eeCkm+Gk+p    + C Nf+rV+q+ n+thLyvCG++aF+PvCt++n+
     hj05106   124 VEECKMAGKDP---THGCGNFVRVIQTFNRTHLYVCGSGAFSPVCTYLNR 170  

                   gdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL
                   g+rse       d++F++   k+esGkgrC+++P  n++sv++ +  +eL
     hj05106   171 GRRSE-------DQVFMI-DSKCESGKGRCSFNPNVNTVSVMI-N--EEL 209  

                   YsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy
                   +sG+++D      F+G+d+aI+Rsl+++   rT+qh+skwl eP+FVd++
     hj05106   210 FSGMYID------FMGTDAAIFRSLTKRNAVRTDQHNSKWLSEPMFVDAH 253  

                   pipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGrryl
                   +ip+  +++D kVYFFF E+ ++ +  ++k+i+s++aR+C nD GG r+l
     hj05106   254 VIPDGTDPNDAKVYFFFKEKLTDNN-RSTKQIHSMIARICPNDTGGLRSL 302  

                   elnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreLgIs
                   + nkWTTFLKARL+CSv +e+g++ ++F+eL++vfll t+++        
     hj05106   303 V-NKWTTFLKARLVCSVTDEDGPE-THFDELEDVFLLETDNP-------- 342  

                   erdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqssEg
                    r++++YG+Fttss++++g    SAVC++++sdI++vF nGpf+h+  Eg
     hj05106   343 -RTTLVYGIFTTSSSVFKG----SAVCVYHLSDIQTVF-NGPFAHK--EG 384  

                   pnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfikshpLm
                   pn+++  y+g ++PyPRPG+Cp++ ++pn+++tk++PDd+++fi++hpLm
     hj05106   385 PNHQLISYQG-RIPYPRPGTCPGGAFTPNMRTTKEFPDDVVTFIRNHPLM 433  

                   devvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTddGt
                   +++++P+h+rPl v+++++y++T+IaVd rV a+dG+ Y+VlFlGTd+Gt
     hj05106   434 YNSIYPIHKRPLIVRIGTDYKYTKIAVD-RVNAADGR-YHVLFLGTDRGT 481  

                   vlKkvvvlsrsss.syeevvleelqvfkdpriePvqnleisskq<-*
                   v+ kvvvl+ + s s +e++leel+vfk +  +P+++++issk+   
     hj05106   482 VQ-KVVVLPTNNSvS-GELILEELEVFKNH--APITTMKISSKK    521  

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