hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-17111932/chunk_1/iprscan-20080812-17111932.nocrc
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Query sequence: hj05243
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00069.15.fs Protein kinase domain                       129.8    9.3e-37   1
PF00069.15.ls Protein kinase domain                        72.9    9.6e-19   1
PF07714.7.fs Protein tyrosine kinase                      38.0    6.2e-11   2
PF00240.13.fs Ubiquitin family                             19.0    0.00011   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00069.15.ls   1/1       1   263 [.     1   287 []    72.9  9.6e-19
PF00069.15.fs   1/1      18   173 ..    56   213 ..   129.8  9.3e-37
PF07714.7.fs   1/2      41    97 ..    84   139 ..    32.5  2.4e-09
PF00240.13.fs   1/1     267   305 ..     1    46 [.    19.0  0.00011

Alignments of top-scoring domains:
PF00069.15.ls: domain 1 of 1, from 1 to 263: score 72.9, E = 9.6e-19
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                         ++ lG+G                        + e s+   +   
     hj05243     1    ---KSALGQG------------------------DLEMSSDGTI--- 17   

                   lsEiqilkrLsHpNIvrlidvfed......kdhlylVlEycegGLrvldL
                           rL HpN+v  +dv e  ++  ++d + l +Eyc+gG    dL
     hj05243    18 --------RLTHPNVVAARDVPEGmqnlapNDLPLLAMEYCQGG----DL 55   

                   fdylsetrrkgp..llfsedeakkialQilrgleYLHsngiiHRDLKPeN
                     yl   + +++ +l   e  +   +  i+++l YLH+n+iiHRDLKPeN
     hj05243    56 RKYLN--QFENCcgL--REGAILTLLSDIASALRYLHENRIIHRDLKPEN 101  

                   ILldnngvvdafl..KiaDFGlAkklst.sss.lttfvGTpwYmAPEvll
                   I l +  +    l +Ki+D G Ak   ++ +s +t+fvGT+ Y+APE+l 
     hj05243   102 IVLQQGEQR---LihKIIDLGYAKE--LdQGSlCTSFVGTLQYLAPELLE 146  

                   ggngygtkvDvWSlGvilyelltGk...pPFsgev.qds.ldqlqlirki
                    +++y+  vD WS+G + +e +tG ++ +P ++ v+++s+++q+  ++ +
     hj05243   147 -QQKYTVTVDYWSFGTLAFECITGFrpfLPNWQPVqWHSkVRQKSEVDIV 195  

                   lgpplefdspewdsisrsefr.r.l.pnlseeakdLikkcLnkDPskRlt
                    +++l      ++s +    ++ +l+  l e + + +  +L + P +R t
     hj05243   196 VSEDLNGTVKFSSSLP----YpNnLnSVLAERLEKWLQLMLMWHPRQRGT 241  

                   ............aeeilqHPwf<-*
                   +++ ++++  +  ++il+ + +   
     hj05243   242 dptygpngcfkaLDDILNLKLV    263  

PF00069.15.fs: domain 1 of 1, from 18 to 173: score 129.8, E = 9.3e-37
                   *->rLsHpNIvrlidvfed......kdhlylVlEycegGLrvldLfdyls
                      rL HpN+v  +dv e  ++  ++d + l +Eyc+gG    dL  yl 
     hj05243    18    RLTHPNVVAARDVPEGmqnlapNDLPLLAMEYCQGG----DLRKYLN 60   

                   etrrkgp..llfsedeakkialQilrgleYLHsngiiHRDLKPeNILldn
                     + +++ +l   e  +   +  i+++l YLH+n+iiHRDLKPeNI l +
     hj05243    61 --QFENCcgL--REGAILTLLSDIASALRYLHENRIIHRDLKPENIVLQQ 106  

                   ngvvdafl..KiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngy
                     +    l +Ki+D G Ak   ++ +s +t+fvGT+ Y+APE+l  +++y
     hj05243   107 GEQR---LihKIIDLGYAKE--LdQGSlCTSFVGTLQYLAPELLE-QQKY 150  

                   gtkvDvWSlGvilyelltGkpPF<-*
                   +  vD WS+G + +e +tG  PF   
     hj05243   151 TVTVDYWSFGTLAFECITGFRPF    173  

PF07714.7.fs: domain 1 of 2, from 41 to 97: score 32.5, E = 2.4e-09
                   *->g.lyiVtEymegGdLldfLrkhregrpLtlkd..LlsfalQiAkGMe
                      + +++ +Ey++gGdL+++L +   ++   l ++ +l    +iA+++ 
     hj05243    41    DlPLLAMEYCQGGDLRKYLNQF--ENCCGLREgaILTLLSDIASALR 85   

                   YLesknfvHRDL<-*
                   YL++++++HRDL   
     hj05243    86 YLHENRIIHRDL    97   

PF00240.13.fs: domain 1 of 1, from 267 to 305: score 19.0, E = 0.00011
                   *->KtldgkgfatdgstitlevdpsdTVlelKekIeekegipvdqQrLi<
                       + +g        ++t+ v ++++   lK++I++ +gip + Q L+ 
     hj05243   267    NMVTGT-------IHTYPVTEDESLQSLKARIQQDTGIPEEDQELL  305  

                   -*
                     
     hj05243     -    -    

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