hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-17111932/chunk_1/iprscan-20080812-17111932.nocrc
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Query sequence: hj05243
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                  99.9      3e-25   1
SM00219                                                 -86.9    9.3e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00220    1/1       1   263 [.     1   231 []    99.9    3e-25
SM00219    1/1       9   258 ..     1   280 []   -86.9  9.3e-06

Alignments of top-scoring domains:
SM00220: domain 1 of 1, from 1 to 263: score 99.9, E = 3e-25
                   *->YellkklGkGaFGkVylardkktgrlvAiKvikerilrEikiLkk..
                            lG+G         d +                    +++++
     hj05243     1    ---KSALGQG---------DLE--------------------MSSdg 15   

                   ....dHPNIVkLydvfed.......dklylVmEyceGdlGdLfdllkkrg
                   + +  HPN+V   dv e  ++  ++d   l mEyc G  GdL+++l +  
     hj05243    16 tirlTHPNVVAARDVPEGmqnlapnDLPLLAMEYCQG--GDLRKYLNQFE 63   

                   rrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds....
                       +++l E+ +  ++  i+saL YLH+++IiHRDLKPeNi L +++++
     hj05243    64 N---CCGLREgAILTLLSDIASALRYLHENRIIHRDLKPENIVLQQgeqr 110  

                   .hvKlaDFGlArql......ttfvGTpeYmAPEvl...gYgkpavDiWSl
                      K++D G A++l++++  t+fvGT+ Y+APE+l++++Y+   vD WS+
     hj05243   111 lIHKIIDLGYAKELdqgslcTSFVGTLQYLAPELLeqqKYTV-TVDYWSF 159  

                   GcilyElltGkpPFp...qldlifkkig......................
                   G + +E++tG  PF ++ q+ +   k++ +++ +   +++ +++ + +++
     hj05243   160 GTLAFECITGFRPFLpnwQPVQWHSKVRqksevdivvsedlngtvkfsss 209  

                   ...........SpeakdLikklLvkdPekRlt........a.eaLedeld
                    +++++ ++   + +   ++ +L + P++R t+++ +++++ +aL    d
     hj05243   210 lpypnnlnsvlAERLEKWLQLMLMWHPRQRGTdptygpngCfKALD---D 256  

                   ikaHPff<-*
                   i +   +   
     hj05243   257 ILNLKLV    263  

SM00219: domain 1 of 1, from 9 to 258: score -86.9, E = 9.3e-06
                   *->ltlgkkLGeGaFGeVykGtlk....ieVAVKtLkedakeeFlrEaki
                      l++              Gt + +++  VA   + e+           
     hj05243     9    LEMSSD-----------GTIRlthpNVVAARDVPEG----------- 33   

                   MkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLrkn
                   M +l                        + +++ mEy+ gGdL++yL + 
     hj05243    34 MQNL--------------APN-------DLPLLAMEYCQGGDLRKYL-NQ 61   

                   rpk...lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk...
                    ++  +l     l    +IA+  +YL++++++HRDL   N+ +  + ++ 
     hj05243    62 FENccgLREGAILTLLSDIASALRYLHENRIIHRDLKPENIVLQQGEqrl 111  

                   vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkd
                   + KI D G +++l+ +       +  ++       ++  +  +APE l  
     hj05243   112 IHKIIDLGYAKELDQG-------SLCTS-------FVGTLQYLAPELLEQ 147  

                   gkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRl
                    k+t   D WSFG l +E  t   +  p+       + + + ++++    
     hj05243   148 QKYTVTVDYWSFGTLAFECITGFRPFLPN-----WQPVQWHSKVRQKSEV 192  

                   pkPendlpiS...................s..vtCPdelYdlMlqCWaed
                   ++  +     + +++ + +++ + +++ +s   +  ++  +lMl+     
     hj05243   193 DIVVS----EdlngtvkfssslpypnnlnSvlAERLEKWLQLMLM---WH 235  

                   PedRPt.........Fselverl<-*
                   P +R t+++ ++++ F++l ++l   
     hj05243   236 PRQRGTdptygpngcFKALDDIL    258  

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