hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-17285137/chunk_1/iprscan-20080812-17285137.nocrc
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Query sequence: hj05636
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07934.3.fs 8-oxoguanine DNA glycosylase, N-terminal dom   162.5    9.3e-47   1
PF07934.3.ls 8-oxoguanine DNA glycosylase, N-terminal dom   164.3    2.9e-46   1
PF00730.15.ls HhH-GPD superfamily base excision DNA repair    85.0    2.2e-22   1
PF00730.15.fs HhH-GPD superfamily base excision DNA repair    83.0    2.8e-22   1
PF00633.13.fs Helix-hairpin-helix motif                       26.6    5.3e-07   1
PF00633.13.ls Helix-hairpin-helix motif                       28.7      2e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07934.3.fs   1/1      65   181 ..     1   149 []   162.5  9.3e-47
PF07934.3.ls   1/1      65   181 ..     1   149 []   164.3  2.9e-46
PF00730.15.ls   1/1     182   342 ..     1   121 []    85.0  2.2e-22
PF00730.15.fs   1/1     182   342 ..     1   121 []    83.0  2.8e-22
PF00633.13.fs   1/1     268   297 ..     1    30 []    26.6  5.3e-07
PF00633.13.ls   1/1     268   297 ..     1    30 []    28.7    2e-05

Alignments of top-scoring domains:
PF07934.3.fs: domain 1 of 1, from 65 to 181: score 162.5, E = 9.3e-47
                   *->kLpvslpeeldLkktLrcGQsFRWkrtekgtyysctleysgvlggrv
                      ++p++ ++el+L+ +L++GQsFRW++++ +       ++sgvl ++v
     hj05636    65    SIPCP-RSELRLDLVLPSGQSFRWREQSPA-------HWSGVLADQV 103  

                   iaiegvpelvsLrQeedddaiiyralndsdpkessdnealenhskeetld
                   +         +L Q+e++  ++++++  +++++s+ + +  +        
     hj05636   104 W---------TLTQTEEQ--LHCTVYRGDKSQASRPTPDELEA------- 135  

                   flkdYFnLdvdLealyedWakkDplfkiskikaidkfkGiRilLrQDPwE
                    +++YF+Ldv L++ly +W + D++f+    ++++kf+G+R+ LrQDP E
     hj05636   136 -VRKYFQLDVTLAQLYHHWGSVDSHFQ----EVAQKFQGVRL-LRQDPIE 179  

                   cL<-*
                   cL   
     hj05636   180 CL    181  

PF07934.3.ls: domain 1 of 1, from 65 to 181: score 164.3, E = 2.9e-46
                   *->kLpvslpeeldLkktLrcGQsFRWkrtekgtyysctleysgvlggrv
                      ++p++ ++el+L+ +L++GQsFRW++++ +       ++sgvl ++v
     hj05636    65    SIPCP-RSELRLDLVLPSGQSFRWREQSPA-------HWSGVLADQV 103  

                   iaiegvpelvsLrQeedddaiiyralndsdpkessdnealenhskeetld
                   +         +L Q+e++  ++++++  +++++s+ + +  +        
     hj05636   104 W---------TLTQTEEQ--LHCTVYRGDKSQASRPTPDELEA------- 135  

                   flkdYFnLdvdLealyedWakkDplfkiskikaidkfkGiRilLrQDPwE
                    +++YF+Ldv L++ly +W + D++f+    ++++kf+G+R+ LrQDP E
     hj05636   136 -VRKYFQLDVTLAQLYHHWGSVDSHFQ----EVAQKFQGVRL-LRQDPIE 179  

                   cL<-*
                   cL   
     hj05636   180 CL    181  

PF00730.15.ls: domain 1 of 1, from 182 to 342: score 85.0, E = 2.2e-22
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xxxxxxx
                   *->vrailsQQtsdkaankiyerLvelygnalddieig.tyH.fptpeai
                       ++i+s + ++++ +++ erL++++g++l++++ + tyH+fp+++a+
     hj05636   182    FSFICSSNNNIARITGMVERLCQAFGPRLIQLD-DvTYHgFPSLQAL 227  

                RF xxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx                
                   asad.eeelrelikelGfynrkAkyIkelakaiv................
                   a  + e++lr+l    G+  ++A+y  + a+ai++++++    ++ ++++
     hj05636   228 AGPEvEAHLRKL----GLG-YRARYVSASARAILeeqgglawlqqlress 272  

                RF                            xxxxxxxxxxxxxxxxxxxxxxx
                   ...........................grpdvvpvvDlhvrrvlkrlggi
                    ++ ++     ++ +++  +        +p+ + +vD+h +++++r +++
     hj05636   273 yeeahkalcilpgvgtkvadciclmalDKPQ-AVPVDVHMWHIAQRDYSW 321  

                RF xxxx xxxxxxxxxxxxxxxx   
                   kerk.ptpekvekllrelwkp<-*
                   +++++  ++ + +  +el +    
     hj05636   322 HPTTsQAKGPSPQTNKELGNF    342  

PF00730.15.fs: domain 1 of 1, from 182 to 342: score 83.0, E = 2.8e-22
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xxxxxxx
                   *->vrailsQQtsdkaankiyerLvelygnalddieig.tyH.fptpeai
                       ++i+s + ++++ +++ erL++++g++l++++ + tyH+fp+++a+
     hj05636   182    FSFICSSNNNIARITGMVERLCQAFGPRLIQLD-DvTYHgFPSLQAL 227  

                RF xxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx                
                   asad.eeelrelikelGfynrkAkyIkelakaiv................
                   a  + e++lr+l    G+  ++A+y  + a+ai++++++    ++ ++++
     hj05636   228 AGPEvEAHLRKL----GLG-YRARYVSASARAILeeqgglawlqqlress 272  

                RF                            xxxxxxxxxxxxxxxxxxxxxxx
                   ...........................grpdvvpvvDlhvrrvlkrlggi
                    ++ ++     ++ +++  +        +p+ + +vD+h +++++r +++
     hj05636   273 yeeahkalcilpgvgtkvadciclmalDKPQ-AVPVDVHMWHIAQRDYSW 321  

                RF xxxx xxxxxxxxxxxxxxxx   
                   kerk.ptpekvekllrelwkp<-*
                   +++++  ++ + +  +el +    
     hj05636   322 HPTTsQAKGPSPQTNKELGNF    342  

PF00633.13.fs: domain 1 of 1, from 268 to 297: score 26.6, E = 5.3e-07
                   *->slegikpasreeLlalpGVGpktAeaIlsy<-*
                        e+ ++ +++ L+ lpGVG k+A++I+++   
     hj05636   268    LRESSYEEAHKALCILPGVGTKVADCICLM    297  

PF00633.13.ls: domain 1 of 1, from 268 to 297: score 28.7, E = 2e-05
                   *->slegikpasreeLlalpGVGpktAeaIlsy<-*
                        e+ ++ +++ L+ lpGVG k+A++I+++   
     hj05636   268    LRESSYEEAHKALCILPGVGTKVADCICLM    297  

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