hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-17285137/chunk_1/iprscan-20080812-17285137.nocrc
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Query sequence: hj05636
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00478                                                 114.9    9.1e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00478    1/1     186   356 ..     1   179 []   114.9  9.1e-30

Alignments of top-scoring domains:
SM00478: domain 1 of 1, from 186 to 356: score 114.9, E = 9.1e-30
                   *->LsqQttdevvnkaterLvfekfpdaVhvewngldnvtfptpedlaaa
                      +s+++++++ + + erL +++f+     ++++ld+vt++ +++l a+
     hj05636   186    CSSNNNIARITGMVERL-CQAFG----PRLIQLDDVTYHGFPSLQAL 227  

                   degseeleelirplgvgfyrrKAkylk.a....kelarilveeyggevPd
                   +   +e+e+ +r+lg+g++ r +    +a  ++++  ++l+++ ++  ++
     hj05636   228 AG--PEVEAHLRKLGLGYRARYVSASArAileeQGGLAWLQQLRESSYEE 275  

                   dreeLlkLpGVGrkTAnvvLsfafgkpdpaiaVDtGhvlRiakRlglvdg
                   + + L+ LpGVG k+A++++++a++kp  a++VD+ h + ia+R + ++ 
     hj05636   276 AHKALCILPGVGTKVADCICLMALDKP-QAVPVDV-HMWHIAQRDYSWH- 322  

                   dppkkstpeeveklleellpkedwrelnlllidhgrt<-*
                     p++s+++  + + ++ l+ +++r+l+  + ++++    
     hj05636   323 --PTTSQAKGPSPQTNKELG-NFFRSLWGPYAGWAQA    356  

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