hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-17402569/chunk_1/iprscan-20080812-17402569.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj05693 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00060.17.fs Ligand-gated ion channel 419.0 6e-123 1 PF00060.17.ls Ligand-gated ion channel 330.6 2.5e-96 1 PF01094.18.ls Receptor family ligand binding region 224.2 2.6e-64 1 PF01094.18.fs Receptor family ligand binding region 222.6 8.4e-64 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01094.18.fs 1/1 69 411 .. 1 421 [] 222.6 8.4e-64 PF01094.18.ls 1/1 69 411 .. 1 421 [] 224.2 2.6e-64 PF00060.17.fs 1/1 574 796 .. 1 237 [. 419.0 6e-123 PF00060.17.ls 1/1 574 801 .] 1 304 [] 330.6 2.5e-96 Alignments of top-scoring domains: PF01094.18.fs: domain 1 of 1, from 69 to 411: score 222.6, E = 8.4e-64 *->qvlpAmrlAiediNadggillpgitlgvedddtcsdsalcsslsFdd q +A+rlAi +N +++ +++l+ ++d++++ + hj05693 69 QEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIET----------AN 105 .aavaaaacllkskgVvaiiGPscssvaiavarlanewgiPlisygatap ++av++a c+++s+gV ai+G + +++++ +++++++i li+++++ + hj05693 106 sFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTE 155 slsdklknryptfaRtvpsdtkq.gaAiadilkhtfgWkrvaviyddddy + s+ v A++++l h + W+ ++++yd d + hj05693 156 GESQ-----------FVLQLRPSlRGALLSLLDH-YEWNCFVFLYDTDRG 193 dygeggcYFtlealedalkeaggkvvavAqasdvvvvsevissdddftal ++l+ ++++ag + ++v s ++ ++ ++ ++ hj05693 194 ----------YSILQAIMEKAGQNGWHV---------SAICVENFNDVSY 224 lkelkdlikskarvivlcgssddlgllkrqilrqarelGlmsggYvwilt l +l +++++ +v++++ ++l + il+q+ +G gY++i + hj05693 225 RQLLEELDRRQEKKFVIDCEIERL----QNILEQIVSVGKHVKGYHYIIA 270 dlwsdsldsqgdgsdlpwariagadeGlltartfpfqldndkareaakgv +l +++ + +++++ +++v hj05693 271 NLGFKD-------------------------------ISLERFIHGGANV 289 lgitlk.p.spefqeflerlkk........sdtevnayallaYDAVyllA +g++l++ ++p++ + ++r+kk ++++ ++s t + + ++l+YD+V+++A hj05693 290 TGFQLVdFnTPMVIKLMDRWKKldqreypgSETPPKYTSALTYDGVLVMA 339 hAlnealrddpngtaglcnacrdsrvddasnalg.g.lnlg.lmkw.dGs + ++ ++r++ ++++++ + g+++++++ +w++G+ hj05693 340 ETFRSLRRQKIDISRRG----------------NaGdCLANpAAPWgQGI 373 qlleylrnkvnFeGltGdvqfddnggrrpdyslvilnwdg<-* ++ + l++ v+++GltG+vqfd +grr++y++++ + hj05693 374 DMERTLKQ-VRIQGLTGNVQFDH-YGRRVNYTMDVFELKS 411 PF01094.18.ls: domain 1 of 1, from 69 to 411: score 224.2, E = 2.6e-64 *->qvlpAmrlAiediNadggillpgitlgvedddtcsdsalcsslsFdd q +A+rlAi +N +++ +++l+ ++d++++ + hj05693 69 QEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIET----------AN 105 .aavaaaacllkskgVvaiiGPscssvaiavarlanewgiPlisygatap ++av++a c+++s+gV ai+G + +++++ +++++++i li+++++ + hj05693 106 sFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTE 155 slsdklknryptfaRtvpsdtkq.gaAiadilkhtfgWkrvaviyddddy + s+ v A++++l h + W+ ++++yd d + hj05693 156 GESQ-----------FVLQLRPSlRGALLSLLDH-YEWNCFVFLYDTDRG 193 dygeggcYFtlealedalkeaggkvvavAqasdvvvvsevissdddftal ++l+ ++++ag + ++v s ++ ++ ++ ++ hj05693 194 ----------YSILQAIMEKAGQNGWHV---------SAICVENFNDVSY 224 lkelkdlikskarvivlcgssddlgllkrqilrqarelGlmsggYvwilt l +l +++++ +v++++ ++l + il+q+ +G gY++i + hj05693 225 RQLLEELDRRQEKKFVIDCEIERL----QNILEQIVSVGKHVKGYHYIIA 270 dlwsdsldsqgdgsdlpwariagadeGlltartfpfqldndkareaakgv +l +++ + +++++ +++v hj05693 271 NLGFKD-------------------------------ISLERFIHGGANV 289 lgitlk.p.spefqeflerlkk........sdtevnayallaYDAVyllA +g++l++ ++p++ + ++r+kk ++++ ++s t + + ++l+YD+V+++A hj05693 290 TGFQLVdFnTPMVIKLMDRWKKldqreypgSETPPKYTSALTYDGVLVMA 339 hAlnealrddpngtaglcnacrdsrvddasnalg.g.lnlg.lmkw.dGs + ++ ++r++ ++++++ + g+++++++ +w++G+ hj05693 340 ETFRSLRRQKIDISRRG----------------NaGdCLANpAAPWgQGI 373 qlleylrnkvnFeGltGdvqfddnggrrpdyslvilnwdg<-* ++ + l++ v+++GltG+vqfd +grr++y++++ + hj05693 374 DMERTLKQ-VRIQGLTGNVQFDH-YGRRVNYTMDVFELKS 411 PF00060.17.fs: domain 1 of 1, from 574 to 796: score 419.0, E = 6e-123 *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcnedd... e+W+ci++ay++vsvvlflv+r fsPyew+ ++ ed++++ hj05693 574 AYEIWMCIVFAYIGVSVVLFLVSR-FSPYEWHT-----EEPEDGkeg 614 ...qspeeepnqftlsnslWFsfgalmqQGcdelPrslSgRivvgvWwfF +++q p pn+f ++nslWFs+ga+mqQGcd++PrslSgRiv+gvWwfF hj05693 615 psdQ-P---PNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFF 660 aLilisSYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstft +Li+isSYTANLAAFLTverm+spIes+eDLakq+ +i YGtl++gst++ hj05693 661 TLIIISSYTANLAAFLTVERMVSPIESAEDLAKQT-EIAYGTLDSGSTKE 709 ffkeskiptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpengly ff++ski++y +mw ym s+ Psvf+++++eGv+rVr++ +g++ hj05693 710 FFRRSKIAVYEKMWTYMRSAE-----PSVFTRTTAEGVARVRKS--KGKF 752 AFlmEstyleyevarnpdCdLttvGevlfgtkGYGIAlpkgSPlrd<-* AFl Est++ey+ +r+p Cd+++vG+ ++++kGYG+A+pkgS lr+ hj05693 753 AFLLESTMNEYIEQRKP-CDTMKVGG-NLDSKGYGVATPKGSSLRR 796 PF00060.17.ls: domain 1 of 1, from 574 to 801: score 330.6, E = 2.5e-96 *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcnedd... e+W+ci++ay++vsvvlflv+r fsPyew+ ++ ed++++ hj05693 574 AYEIWMCIVFAYIGVSVVLFLVSR-FSPYEWHT-----EEPEDGkeg 614 ...qspeeepnqftlsnslWFsfgalmqQGcdelPrslSgRivvgvWwfF +++q p pn+f ++nslWFs+ga+mqQGcd++PrslSgRiv+gvWwfF hj05693 615 psdQ-P---PNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFF 660 aLilisSYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstft +Li+isSYTANLAAFLTverm+spIes+eDLakq+ +i YGtl++gst++ hj05693 661 TLIIISSYTANLAAFLTVERMVSPIESAEDLAKQT-EIAYGTLDSGSTKE 709 ffkeskiptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpengly ff++ski++y +mw ym s+ Psvf+++++eGv+rVr++ +g++ hj05693 710 FFRRSKIAVYEKMWTYMRSAE-----PSVFTRTTAEGVARVRKS--KGKF 752 AFlmEstyleyevarnpdCdLttvGevlfgtkGYGIAlpkgSPlrdklsl AFl Est++ey+ +r+p Cd+++vG+ ++++kGYG+A+pkgS lr+ hj05693 753 AFLLESTMNEYIEQRKP-CDTMKVGG-NLDSKGYGVATPKGSSLRR---- 796 AILeLsEsGelekLenKWwkkkgkCpsestavsssqLglenfaGlFliLg + +e++ hj05693 797 ---------------------R----TEEN-------------------- 801 iGlvLallvalfE<-* hj05693 - ------------- - //