hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-17402569/chunk_1/iprscan-20080812-17402569.nocrc
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Query sequence: hj05693
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00079                                                 350.9   8.1e-101   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00079    1/1     446   799 ..     1   296 []   350.9 8.1e-101

Alignments of top-scoring domains:
SM00079: domain 1 of 1, from 446 to 799: score 350.9, E = 8.1e-101
                   *->tlkVttrilekPfvmfkknpeglkiDPitgnkcfeGyCIDLlealak
                      t++Vtt i+e P+vm+kkn+e++     +gn+++eGyC+DL +++ak
     hj05693   446    TVVVTT-IMESPYVMYKKNHEMF-----EGNDKYEGYCVDLASEIAK 486  

                   ilgFtYelelVpDGkYGskdantgnWnGmIgeLirgeADmAVapLTItae
                   ++g +Y++ +VpDGkYG++da+t+ WnGm+geL++g+A +A+apLTIt  
     hj05693   487 HIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTITLV 536  

                   RervVDFTkPFmelGIsILvkkpdkqksslfsFLePf.............
                   Re+v+DF+kPFm+lGIsI++kkp+k+k+++fsFL+P+  +          
     hj05693   537 REEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLayeiwmcivfayi 586  

                   ..................................................
                   + +      ++ ++ + +++++++++++++++++++ +  ++   + +  
     hj05693   587 gvsvvlflvsrfspyewhteepedgkegpsdqppnefgifnslwfslgaf 636  

                   ................................skkLAAfLTvermespIs
                    +++ + ++++ +++  ++     +    ++ + +LAAfLTverm+spI+
     hj05693   637 mqqgcdisprslsgrivggvwwfftliiissyTANLAAFLTVERMVSPIE 686  

                   sveDLakrnpQtkieyGTvrgssTeefFkrpSkiptysrmwryMssrsks
                   s+eDLak   Qt+i yGT++++sT efF+r Ski  y++mw yM  rs++
     hj05693   687 SAEDLAK---QTEIAYGTLDSGSTKEFFRR-SKIAVYEKMWTYM--RSAE 730  

                   psvfvkslseGvqrvlnskGnYAFlmEstyleYeasrDpnCdYKLvtvGe
                   psvf ++++eGv+rv++skG++AFl+Est++eY+ +r ++Cd  +++vG+
     hj05693   731 PSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYIEQR-KPCD--TMKVGG 777  

                   vfgskGYGIAlpkgSPlrdklSrAILkLsEsGeLekLknKWwkk<-*
                   +++skGYG A+pkgS lr++                      +    
     hj05693   778 NLDSKGYGVATPKGSSLRRR----------------------TE    799  

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