hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-17520505/chunk_1/iprscan-20080812-17520505.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj05937 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02985.12.ls HEAT repeat 283.7 3.4e-82 13 PF02985.12.fs HEAT repeat 268.4 1.3e-77 13 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02985.12.ls 2/13 84 120 .. 1 36 [] 18.4 0.024 PF02985.12.ls 3/13 161 197 .. 1 36 [] 30.5 5.5e-06 PF02985.12.fs 3/13 161 197 .. 1 36 [] 28.5 5.2e-07 PF02985.12.fs 4/13 200 236 .. 1 36 [] 26.7 1.6e-06 PF02985.12.ls 4/13 200 236 .. 1 36 [] 28.7 1.9e-05 PF02985.12.ls 5/13 239 275 .. 1 36 [] 26.0 0.00013 PF02985.12.fs 6/13 278 314 .. 1 36 [] 26.4 2e-06 PF02985.12.ls 6/13 278 314 .. 1 36 [] 28.4 2.4e-05 PF02985.12.ls 7/13 321 357 .. 1 36 [] 22.0 0.002 PF02985.12.ls 8/13 360 396 .. 1 36 [] 22.7 0.0012 PF02985.12.ls 9/13 399 435 .. 1 36 [] 20.6 0.0054 PF02985.12.ls 10/13 438 474 .. 1 36 [] 18.3 0.026 PF02985.12.ls 11/13 477 513 .. 1 36 [] 25.2 0.00021 PF02985.12.fs 12/13 516 552 .. 1 36 [] 25.1 4.6e-06 PF02985.12.ls 12/13 516 552 .. 1 36 [] 27.1 5.7e-05 Alignments of top-scoring domains: PF02985.12.ls: domain 2 of 13, from 84 to 120: score 18.4, E = 0.024 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* ++++ llp+l +l + ++ VR+ A+e+L a++ + hj05937 84 PeYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH 120 PF02985.12.ls: domain 3 of 13, from 161 to 197: score 30.5, E = 5.5e-06 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* + + el +++ +l++D+ p+VR+aAa+ Lg++a+vl hj05937 161 SaVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL 197 PF02985.12.fs: domain 3 of 13, from 161 to 197: score 28.5, E = 5.2e-07 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* + + el +++ +l++D+ p+VR+aAa+ Lg++a+vl hj05937 161 SaVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL 197 PF02985.12.fs: domain 4 of 13, from 200 to 236: score 26.7, E = 1.6e-06 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* +++ +e++p++ +l +D+ ++VR+ A+ea +++a+ l hj05937 200 DnVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 236 PF02985.12.ls: domain 4 of 13, from 200 to 236: score 28.7, E = 1.9e-05 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* +++ +e++p++ +l +D+ ++VR+ A+ea +++a+ l hj05937 200 DnVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 236 PF02985.12.ls: domain 5 of 13, from 239 to 275: score 26.0, E = 0.00013 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* e++ ++p+l ++ +D++++VR+++a +++l + + hj05937 239 EdLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV 275 PF02985.12.fs: domain 6 of 13, from 278 to 314: score 26.4, E = 2e-06 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* e + ++l+p++++l++D ++eVR+aA + +++e+l hj05937 278 EiTKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 314 PF02985.12.ls: domain 6 of 13, from 278 to 314: score 28.4, E = 2.4e-05 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* e + ++l+p++++l++D ++eVR+aA + +++e+l hj05937 278 EiTKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 314 PF02985.12.ls: domain 7 of 13, from 321 to 357: score 22.0, E = 0.002 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* + i++++lp++ +l++D + +V+ a a+ + l+++l hj05937 321 NvIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 357 PF02985.12.ls: domain 8 of 13, from 360 to 396: score 22.7, E = 0.0012 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* ++++++llpl+l l+D+ peVR++ ++ L + ev+ hj05937 360 DnTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 396 PF02985.12.ls: domain 9 of 13, from 399 to 435: score 20.6, E = 0.0054 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* +++ ++llp++++l +D ++VR+a +e + la +l hj05937 399 RqLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL 435 PF02985.12.ls: domain 10 of 13, from 438 to 474: score 18.3, E = 0.026 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* e + ++l l++ +l D ++ +ReaA + L +l+e++ hj05937 438 EfFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 474 PF02985.12.ls: domain 11 of 13, from 477 to 513: score 25.2, E = 0.00021 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* e ++ +++p +l + +Dp++ R+++++++ +l+ev+ hj05937 477 EwAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC 513 PF02985.12.fs: domain 12 of 13, from 516 to 552: score 25.1, E = 4.6e-06 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* + + +++lp++l++ +Dp+++VR ++a++L ++ ++l hj05937 516 DiTTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL 552 PF02985.12.ls: domain 12 of 13, from 516 to 552: score 27.1, E = 5.7e-05 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* + + +++lp++l++ +Dp+++VR ++a++L ++ ++l hj05937 516 DiTTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL 552 //