hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-18031711/chunk_1/iprscan-20080812-18031711.nocrc
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Query sequence: hj06248
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF06467.5.ls    MYM-type Zinc finger                    128.3      2e-35   4
PF06467.5.fs    MYM-type Zinc finger                    120.8    3.7e-33   4
PF08394.1.fs    Archaeal TRASH domain                    14.2    2.5e-05   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF06467.5.ls      1/4      50    97 ..     1    43 []    10.6    0.056
PF08394.1.fs      1/1      84   120 ..     1    37 []    14.2  2.5e-05
PF06467.5.ls      2/4     105   139 ..     1    43 []    39.9  8.2e-09
PF06467.5.fs      2/4     105   139 ..     1    43 []    38.1  7.8e-10
PF06467.5.fs      3/4     146   185 ..     1    43 []    37.2  1.3e-09
PF06467.5.ls      3/4     146   185 ..     1    43 []    39.1  1.4e-08
PF06467.5.ls      4/4     192   226 ..     1    43 []    38.6  1.9e-08
PF06467.5.fs      4/4     192   226 ..     1    43 []    36.8  1.7e-09

Alignments of top-scoring domains:
PF06467.5.ls: domain 1 of 4, from 50 to 97: score 10.6, E = 0.056
                   *->klFCSesClskykrknnvkaglvtkrt.....trCsyCkkeisnlee
                        FC++sC  k+++   ++ +++  +++++ + +C yCk+ + +++e
     hj06248    50    YNFCNSSCVAKFQALSMQSSPNGQFVApsdiqLKCNYCKNSFCSKPE 96   

                   l<-*
                   +   
     hj06248    97 I    97   

PF08394.1.fs: domain 1 of 1, from 84 to 120: score 14.2, E = 2.5e-05
                   *->CDYCGkeIvGePitykvknrvYYvCCpTClselKKkl<-*
                      C YC +  ++ P ++++ n+v  +C +TC  + KK     
     hj06248    84    CNYCKNSFCSKPEILEWENKVHQFCSKTCSDDYKKLH    120  

PF06467.5.ls: domain 2 of 4, from 105 to 139: score 39.9, E = 8.2e-09
                   *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
                      ++FCS+ C + yk+  ++++         C+yC+ e++++e++   
     hj06248   105    HQFCSKTCSDDYKKLHCIVTY--------CEYCQEEKTLHETV    139  

PF06467.5.fs: domain 2 of 4, from 105 to 139: score 38.1, E = 7.8e-10
                   *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
                      ++FCS+ C + yk+  ++++         C+yC+ e++++e++   
     hj06248   105    HQFCSKTCSDDYKKLHCIVTY--------CEYCQEEKTLHETV    139  

PF06467.5.fs: domain 3 of 4, from 146 to 185: score 37.2, E = 1.3e-09
                   *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
                      ++FCSe+C   yk++++++ gl++++   C yC+++++ +++    
     hj06248   146    RPFCSEGCKLLYKQDFARRLGLRCVT---CNYCSQLCKKGATK    185  

PF06467.5.ls: domain 3 of 4, from 146 to 185: score 39.1, E = 1.4e-08
                   *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
                      ++FCSe+C   yk++++++ gl++++   C yC+++++ +++    
     hj06248   146    RPFCSEGCKLLYKQDFARRLGLRCVT---CNYCSQLCKKGATK    185  

PF06467.5.ls: domain 4 of 4, from 192 to 226: score 38.6, E = 1.9e-08
                   *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
                      ++FCSe+C+ k++ ++ + a+        C++Ck++++++e +   
     hj06248   192    RDFCSEDCCKKFQDWYYKAAR--------CDCCKSQGTLKERV    226  

PF06467.5.fs: domain 4 of 4, from 192 to 226: score 36.8, E = 1.7e-09
                   *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
                      ++FCSe+C+ k++ ++ + a+        C++Ck++++++e +   
     hj06248   192    RDFCSEDCCKKFQDWYYKAAR--------CDCCKSQGTLKERV    226  

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