hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-18031711/chunk_1/iprscan-20080812-18031711.nocrc
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Query sequence: hj06248
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00746                                                 124.9      9e-33   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00746    1/5      30    65 ..     1    41 []     9.4      5.1
SM00746    2/5      84   120 ..     1    41 []    33.2  3.5e-05
SM00746    3/5     126   161 ..     1    41 []    30.1   0.0003
SM00746    4/5     172   207 ..     1    41 []    31.1  0.00015
SM00746    5/5     213   248 ..     1    41 []    21.0     0.16

Alignments of top-scoring domains:
SM00746: domain 1 of 5, from 30 to 65: score 9.4, E = 5.1
                   *->CdfCgkeienpgtgimvvrydGkvyKyFCSskClskfkkkr<-*
                       +fC++    p+++      dGk y  FC+s+C  kf++     
     hj06248    30    -PFCKRNSL-PQYQATMP--DGKLY-NFCNSSCVAKFQALS    65   

SM00746: domain 2 of 5, from 84 to 120: score 33.2, E = 3.5e-05
                   *->CdfCgkeienpgtgimvvrydGkvyKyFCSskClskfkkkr<-*
                      C +C++ +   + ++ ++ +++kv+ +FCS++C + +kk     
     hj06248    84    CNYCKNSF--CSKPEILE-WENKVH-QFCSKTCSDDYKKLH    120  

SM00746: domain 3 of 5, from 126 to 161: score 30.1, E = 0.0003
                   *->CdfCgkeienpgtgimvvrydGkvyKyFCSskClskfkkkr<-*
                      C++C  e   ++t   v+ + G     FCS++C+  +k+++   
     hj06248   126    CEYCQEEKTLHET---VN-FSGVKR-PFCSEGCKLLYKQDF    161  

SM00746: domain 4 of 5, from 172 to 207: score 31.1, E = 0.00015
                   *->CdfCgkeienpgtgimvvrydGkvyKyFCSskClskfkkkr<-*
                      C +C++ ++ +g+   ++ +dG v  +FCS++C++kf+ ++   
     hj06248   172    CNYCSQLCK-KGA---TKELDGVVR-DFCSEDCCKKFQDWY    207  

SM00746: domain 5 of 5, from 213 to 248: score 21.0, E = 0.16
                   *->CdfCgkeienpgtgimvvrydGkvyKyFCSskClskfkkkr<-*
                      Cd C+ +   ++    v  + G ++ +FC ++Cl +f  ++   
     hj06248   213    CDCCKSQGTLKER---VQ-WRGEMK-HFCDQHCLLRFYCQQ    248  

//