hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-18203627/chunk_1/iprscan-20090630-18203627.nocrc
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Query sequence: hj06379s3
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00502                                                 164.5      1e-44   1
SM00297                                                 113.9    1.8e-29   1
SM00336                                                  99.5      4e-25   2
SM00249                                                  55.3    8.2e-12   2
SM00184                                                  50.9    1.7e-10   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00249    1/2     128   189 ..     1    39 []     3.2       18
SM00184    1/2     129   188 ..     1    23 []    43.2  3.4e-08
SM00336    1/2     216   263 ..     1    51 []    48.2  1.1e-09
SM00184    2/2     221   283 ..     1    23 []     7.7      2.6
SM00336    2/2     275   316 ..     1    51 []    51.2  1.3e-10
SM00502    1/1     323   449 ..     1   132 []   164.5    1e-44
SM00249    2/2     893   936 ..     1    39 []    52.1  7.4e-11
SM00297    1/1     963  1086 ..     1   118 []   113.9  1.8e-29

Alignments of top-scoring domains:
SM00249: domain 1 of 2, from 128 to 189: score 3.2, E = 18
                   *->yC.vCgk.........g.llqCdkgCdrwyHv.Clgpple.......
                      +C vC+++  ++++ + +ll C        H  Cl+  +e++++ + 
   hj06379s3   128    TCaVCQQslqsrreaePkLLPCL-------HSfCLRCLPEperqlsv 167  

                   ..........epdg.wyCprCk<-*
                   + +++++++  + g  +Cp C+   
   hj06379s3   168 pipggsngdiQQVGvIRCPVCR    189  

SM00184: domain 1 of 2, from 129 to 188: score 43.2, E = 3.4e-08
                   *->CpICle.........pvvlpCgH.FCr.Ci.................
                      C++C ++ +++++ +p++lpC H+FC +C+++++++ + + ++++++
   hj06379s3   129    CAVCQQslqsrreaePKLLPCLHsFCLrCLpeperqlsvpipggsng 175  

                   .........CPlC<-*
                   + ++ +  +CP+C   
   hj06379s3   176 diqqvgvirCPVC    188  

SM00336: domain 1 of 2, from 216 to 263: score 48.2, E = 1.1e-09
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      +++++C++++d++ a+ fC +e+g++lC++C ea  Hq++k++++H 
   hj06379s3   216    KSEQVCTSCEDNASAVGFC-VECGEWLCKTCIEA--HQRVKFTKDHL 259  

                   vvll<-*
                   ++     
   hj06379s3   260 IRKK    263  

SM00184: domain 2 of 2, from 221 to 283: score 7.7, E = 2.6
                   *->CpICle.....pvvlpCgH.FCr.Ci.....................
                      C+ C ++ +   ++ +Cg   C++Ci+ +++ + ++++  +++++ +
   hj06379s3   221    CTSCEDnasavGFCVECGEwLCKtCIeahqrvkftkdhlirkkedvs 267  

                   ............CPlC<-*
                   ++ + +++++  CP+    
   hj06379s3   268 esvgasgqrpvfCPVH    283  

SM00336: domain 2 of 2, from 275 to 316: score 51.2, E = 1.3e-10
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      +r++ C++H+  e +++fC e+++ l CrdC +  eH      + Hr
   hj06379s3   275    QRPVFCPVHK-QEQLKLFC-ETCDRLTCRDCQLL-EH------KEHR 312  

                   vvll<-*
                   +++l   
   hj06379s3   313 YQFL    316  

SM00502: domain 1 of 1, from 323 to 449: score 164.5, E = 1e-44
                   *->qreaLeelleklrkkaeelekalkqldsiiqevegGqvdenaeevea
                      q+ a+e ll+kl +k+++ ++a+ q++++i+ev+     e+ ++ve+
   hj06379s3   323    QKGAIENLLAKLLEKKNYVHFAATQVQNRIKEVN-----ETNKRVEQ 364  

                   eikaafdeLrnaLnerkkqLledLeevkenklkkLeqQlesltqkqekle
                   eik+a+++L+n++n+++k Ll++Le+v++++++kL qQ+ ++t+++++++
   hj06379s3   365 EIKVAIFTLINEINKKGKSLLQQLENVTKERQMKLLQQQNDITGLSRQVK 414  

                   hainfaeeaLnsgdptelLlskkliierlqellkq<-*
                   h++nf+++a+ sg++t+lL+sk+li+++l++ lk+   
   hj06379s3   415 HVMNFTNWAIASGSSTALLYSKRLITFQLRHILKA    449  

SM00249: domain 2 of 2, from 893 to 936: score 52.1, E = 7.4e-11
                   *->yC.vCgk.g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprCk<-
                      +C vC+ +g+ll+C+ +C++ +H++C+ p+l++ p+g+w+C  C+  
   hj06379s3   893    WCaVCQNgGdLLCCE-KCPKVFHLtCHVPTLLsFPSGdWICTFCR   936  

                   *
                    
   hj06379s3     -   -    

SM00297: domain 1 of 1, from 963 to 1086: score 113.9, E = 1.8e-29
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      sp +q+k+++ll  l++++ s              F+epv+++   +
   hj06379s3   963    SPVdQRKCERLLLYLYCHELSI------------EFQEPVPAS---I 994  

                   PDYydiIkkPMDLktIkkklengkY...ssleeFvaDfnLmfsNAktYNe
                   P+Yy+iIkkPMDL+t+kkkl++ + ++ + +++FvaD++L+f+N+  +Ne
   hj06379s3   995 PNYYKIIKKPMDLSTVKKKLQKKHSqhyQIPDDFVADVRLIFKNCERFNE 1044 

                   .................pdsevykdAkkLeklfeeklkelpp<-*
                     +  +   ++++ + + dsev +++k    +fe+kl+e++    
   hj06379s3  1045 mmkvvqvyadtqeinlkADSEVAQAGKAVALYFEDKLTEIYS    1086 

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