hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-18144610/chunk_1/iprscan-20080812-18144610.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj06473 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00060.17.ls Ligand-gated ion channel 543.7 1.8e-160 1 PF00060.17.fs Ligand-gated ion channel 541.9 6.4e-160 1 PF01094.18.fs Receptor family ligand binding region 204.8 1.9e-58 1 PF01094.18.ls Receptor family ligand binding region 166.1 8.3e-47 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01094.18.ls 1/1 1 300 [. 1 421 [] 166.1 8.3e-47 PF01094.18.fs 1/1 2 300 .. 55 421 .] 204.8 1.9e-58 PF00060.17.fs 1/1 463 754 .. 1 304 [] 541.9 6.4e-160 PF00060.17.ls 1/1 463 754 .. 1 304 [] 543.7 1.8e-160 Alignments of top-scoring domains: PF01094.18.ls: domain 1 of 1, from 1 to 300: score 166.1, E = 8.3e-47 *->qvlpAmrlAiediNadggillpgitlgvedddtcsdsalcsslsFdd hj06473 - ----------------------------------------------- - aavaaaacllkskgVvaiiGPscssvaiavarlanewgiPlisygataps c++ skgV+ai+G + ++ ++ ++++++++ +i+++++ ++ hj06473 1 ------ICSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPVDT 44 lsdklknryptfaRtvpsdtkq.gaAiadilkhtfgWkrvaviyddddyd + v + +A+++i+ h ++W++++ iyd d + hj06473 45 SNQ-----------FVLQLRPElQDALISIIDH-YKWQKFVYIYDADRG- 81 ygeggcYFtlealedalkeaggkvvavAqasdvvvvsevissdddftall l+ l+++l a k+++v + v+ ++ ++ + hj06473 82 ---------LSVLQKVLDTAAEKNWQV---------TAVNILTTTEEGYR 113 kelkdlikskarvivlcgssddlg.llkrqilrqarelGlmsggYvwilt +dl k+k+r +v++++s++l+ +l + i ++ ++ gY++il+ hj06473 114 MLFQDLEKKKERLVVVDCESERLNaILGQIIKLEK-----NGIGYHYILA 158 dlwsdsldsqgdgsdlpwariagadeGlltartfpfqldndkareaakgv +l + + +d k++e +++v hj06473 159 NLGFMD-------------------------------IDLNKFKESGANV 177 lgitlk.p.spefqeflerlkk.........sdtevnayallaYDAVyll +g++l++ +++ ++++++k+++ +++++ + + + + ++l+YD+V+++ hj06473 178 TGFQLVnYtDTIPAKIMQQWKNsdardhtrvDWKRPKYTSALTYDGVKVM 227 AhAlnealrddpngtaglcnacrdsrvddasnalg.g.lnlg.lmkw.dG A+A++ ++r++ ++++++ + g+++++++ +w++G hj06473 228 AEAFQSLRRQRIDISRRG----------------NaGdCLANpAVPWgQG 261 sqlleylrnkvnFeGltGdvqfddnggrrpdyslvilnwdg<-* +++ ++l++ v+FeGltG+vqf++ grr++y+l ++ ++ hj06473 262 IDIQRALQQ-VRFEGLTGNVQFNE-KGRRTNYTLHVIEMKH 300 PF01094.18.fs: domain 1 of 1, from 2 to 300: score 204.8, E = 1.9e-58 *->cllkskgVvaiiGPscssvaiavarlanewgiPlisygatapslsdk c++ skgV+ai+G + ++ ++ ++++++++ +i+++++ ++ + hj06473 2 CSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPVDTSNQ- 47 lknryptfaRtvpsdtkq.gaAiadilkhtfgWkrvaviyddddydygeg v + +A+++i+ h ++W++++ iyd d + hj06473 48 ----------FVLQLRPElQDALISIIDH-YKWQKFVYIYDADRG----- 81 gcYFtlealedalkeaggkvvavAqasdvvvvsevissdddftallkelk l+ l+++l a k+++v + v+ ++ ++ + + hj06473 82 -----LSVLQKVLDTAAEKNWQV---------TAVNILTTTEEGYRMLFQ 117 dlikskarvivlcgssddlg.llkrqilrqarelGlmsggYvwiltdlws dl k+k+r +v++++s++l+ +l + i ++ ++ gY++il++l + hj06473 118 DLEKKKERLVVVDCESERLNaILGQIIKLEK-----NGIGYHYILANLGF 162 dsldsqgdgsdlpwariagadeGlltartfpfqldndkareaakgvlgit + +d k++e +++v+g++ hj06473 163 MD-------------------------------IDLNKFKESGANVTGFQ 181 lk.p.spefqeflerlkk.........sdtevnayallaYDAVyllAhAl l++ +++ ++++++k+++ +++++ + + + + ++l+YD+V+++A+A+ hj06473 182 LVnYtDTIPAKIMQQWKNsdardhtrvDWKRPKYTSALTYDGVKVMAEAF 231 nealrddpngtaglcnacrdsrvddasnalg.g.lnlg.lmkw.dGsqll + ++r++ ++++++ + g+++++++ +w++G+++ hj06473 232 QSLRRQRIDISRRG----------------NaGdCLANpAVPWgQGIDIQ 265 eylrnkvnFeGltGdvqfddnggrrpdyslvilnwdg<-* ++l++ v+FeGltG+vqf++ grr++y+l ++ ++ hj06473 266 RALQQ-VRFEGLTGNVQFNE-KGRRTNYTLHVIEMKH 300 PF00060.17.fs: domain 1 of 1, from 463 to 754: score 541.9, E = 6.4e-160 *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcnedd... e+W+ci++ay++vsvvlflv+r fsPyew+ +++e+++++ hj06473 463 AYEIWMCIVFAYIGVSVVLFLVSR-FSPYEWHS-----EEFEEGrdq 503 ....qspeeepnqftlsnslWFsfgalmqQGcdelPrslSgRivvgvWwf ++++q +n+f ++nslWFs+ga+mqQGcd++PrslSgRiv+gvWwf hj06473 504 ttsdQ-----SNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWF 548 FaLilisSYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstf F+Li+isSYTANLAAFLTverm+spIes+eDLakq+ +i YGtl+ gst+ hj06473 549 FTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQT-EIAYGTLEAGSTK 597 tffkeskiptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpengl +ff++ski+++ +mw ym+s+ Psvfv+++eeG+ rVr++ +g+ hj06473 598 EFFRRSKIAVFEKMWTYMKSAE-----PSVFVRTTEEGMIRVRKS--KGK 640 yAFlmEstyleyevarnpdCdLttvGevlfgtkGYGIAlpkgSPlrdkls yA+l Est++ey+ +r+p Cd+++vG+ ++++kGYGIA+pkgS lr ++ hj06473 641 YAYLLESTMNEYIEQRKP-CDTMKVGG-NLDSKGYGIATPKGSALRGPVN 688 lAILeLsEsGelekLenKWwkkkgkCpsesta..vsssqLglenfaGlFl lA+L+LsE+G+l+kL+ KWw++kg+C s+++ +++++s+L+l+n+aG+F+ hj06473 689 LAVLKLSEQGVLDKLKSKWWYDKGECGSKDSGskDKTSALSLSNVAGVFY 738 iLgiGlvLallvalfE<-* iL++Gl+La+lval+E hj06473 739 ILIGGLGLAMLVALIE 754 PF00060.17.ls: domain 1 of 1, from 463 to 754: score 543.7, E = 1.8e-160 *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcnedd... e+W+ci++ay++vsvvlflv+r fsPyew+ +++e+++++ hj06473 463 AYEIWMCIVFAYIGVSVVLFLVSR-FSPYEWHS-----EEFEEGrdq 503 ....qspeeepnqftlsnslWFsfgalmqQGcdelPrslSgRivvgvWwf ++++q +n+f ++nslWFs+ga+mqQGcd++PrslSgRiv+gvWwf hj06473 504 ttsdQ-----SNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWF 548 FaLilisSYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstf F+Li+isSYTANLAAFLTverm+spIes+eDLakq+ +i YGtl+ gst+ hj06473 549 FTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQT-EIAYGTLEAGSTK 597 tffkeskiptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpengl +ff++ski+++ +mw ym+s+ Psvfv+++eeG+ rVr++ +g+ hj06473 598 EFFRRSKIAVFEKMWTYMKSAE-----PSVFVRTTEEGMIRVRKS--KGK 640 yAFlmEstyleyevarnpdCdLttvGevlfgtkGYGIAlpkgSPlrdkls yA+l Est++ey+ +r+p Cd+++vG+ ++++kGYGIA+pkgS lr ++ hj06473 641 YAYLLESTMNEYIEQRKP-CDTMKVGG-NLDSKGYGIATPKGSALRGPVN 688 lAILeLsEsGelekLenKWwkkkgkCpsesta..vsssqLglenfaGlFl lA+L+LsE+G+l+kL+ KWw++kg+C s+++ +++++s+L+l+n+aG+F+ hj06473 689 LAVLKLSEQGVLDKLKSKWWYDKGECGSKDSGskDKTSALSLSNVAGVFY 738 iLgiGlvLallvalfE<-* iL++Gl+La+lval+E hj06473 739 ILIGGLGLAMLVALIE 754 //