hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-18144610/chunk_1/iprscan-20080812-18144610.nocrc
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Query sequence: hj06473
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00079                                                 417.7   6.5e-121   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00079    1/1     335   710 ..     1   296 []   417.7 6.5e-121

Alignments of top-scoring domains:
SM00079: domain 1 of 1, from 335 to 710: score 417.7, E = 6.5e-121
                   *->tlkVttrilekPfvmfkknpeglkiDPitgnkcfeGyCIDLlealak
                      t++Vtt ile P+vm+kkn   +     +gn+++eGyC++L  ++ak
     hj06473   335    TYIVTT-ILEDPYVMLKKNANQF-----EGNDRYEGYCVELAAEIAK 375  

                   ilgFtYelelVpDGkYGskdantgnWnGmIgeLirgeADmAVapLTItae
                   ++g++Y le+V DGkYG++d++t+ WnGm+geL++g+AD AVapLTIt  
     hj06473   376 HVGYSYRLEIVSDGKYGARDPDTKAWNGMVGELVYGRADVAVAPLTITLV 425  

                   RervVDFTkPFmelGIsILvkkpdkqksslfsFLePf.............
                   Re+v+DF+kPFm+lGIsI++kkp+k+k+++fsFL+P+  +          
     hj06473   426 REEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLayeiwmcivfayi 475  

                   ..................................................
                   + +      ++ ++ + ++++ ++++++++++++++ +  ++   + +  
     hj06473   476 gvsvvlflvsrfspyewhseefeegrdqttsdqsnefgifnslwfslgaf 525  

                   ................................skkLAAfLTvermespIs
                    +++ + ++++ +++  ++     +    ++ + +LAAfLTverm+spI+
     hj06473   526 mqqgcdisprslsgrivggvwwfftliiissyTANLAAFLTVERMVSPIE 575  

                   sveDLakrnpQtkieyGTvrgssTeefFkrpSkiptysrmwryMssrsks
                   s+eDLak   Qt+i yGT+  +sT efF+r Ski  +++mw yM  +s++
     hj06473   576 SAEDLAK---QTEIAYGTLEAGSTKEFFRR-SKIAVFEKMWTYM--KSAE 619  

                   psvfvkslseGvqrvlnskGnYAFlmEstyleYeasrDpnCdYKLvtvGe
                   psvfv++++eG  rv++skG+YA+l+Est++eY+ +r ++Cd  +++vG+
     hj06473   620 PSVFVRTTEEGMIRVRKSKGKYAYLLESTMNEYIEQR-KPCD--TMKVGG 666  

                   vfgskGYGIAlpkgSPlrdklSrAILkLsEsGeLekLknKWwkk<-*
                   +++skGYGIA+pkgS lr  +++A+LkLsE G+L+kLk KWw++   
     hj06473   667 NLDSKGYGIATPKGSALRGPVNLAVLKLSEQGVLDKLKSKWWYD    710  

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