hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-18210995/chunk_1/iprscan-20080812-18210995.nocrc
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Query sequence: hj06729
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07001.2.fs BAT2 N-terminus                                471.9   9.9e-141   1
PF07001.2.ls BAT2 N-terminus                                473.8   1.9e-139   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07001.2.fs   1/1       5   196 ..     1   197 []   471.9 9.9e-141
PF07001.2.ls   1/1       5   196 ..     1   197 []   473.8 1.9e-139

Alignments of top-scoring domains:
PF07001.2.fs: domain 1 of 1, from 5 to 196: score 471.9, E = 9.9e-141
                   *->MSdrSGQntkakDGksKYstLSLfntYkGksLepGqrgnvapRhGLQ
                      MSdrSG+++k+kDGk KYs+L+Lf+tYkGksLe+ q+++vapRhGLQ
     hj06729     5    MSDRSGPTAKGKDGK-KYSSLNLFDTYKGKSLEI-QKPAVAPRHGLQ 49   

                   SLGKvAniaRRMPPPAnLPSLkAENkGnDPnvpiVPkDGTGWAskqeqnd
                   SLGKvA iaRRMPPPAnLPSLkAENkGnDPnv++VPkDGTGWAskqeq+d
     hj06729    50 SLGKVA-IARRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSD 98   

                   pksspatptqpppaqPkPgvqqpasnLqpprqsiaqENTneVpsgpKSWa
                   pkss+a+++qp ++qP+P++q+pasn qp+r+++a+ENT++Vpsg+KSWa
     hj06729    99 PKSSDASTAQPLESQPLPASQTPASN-QPKRPPAAPENTPLVPSGVKSWA 147  

                   qasnkegghgdGlqansrllrfsaeEFPsLqAPAgDqDKankekeitdsS
                   qas+++g+hgdG++a+s+l+rfs+eEFP+LqA AgDqDKa+ke+e++++S
     hj06729   148 QASVTHGAHGDGGRASSLLSRFSREEFPTLQA-AGDQDKAAKERESAEQS 196  

                   <-*
                      
     hj06729     -     -    

PF07001.2.ls: domain 1 of 1, from 5 to 196: score 473.8, E = 1.9e-139
                   *->MSdrSGQntkakDGksKYstLSLfntYkGksLepGqrgnvapRhGLQ
                      MSdrSG+++k+kDGk KYs+L+Lf+tYkGksLe+ q+++vapRhGLQ
     hj06729     5    MSDRSGPTAKGKDGK-KYSSLNLFDTYKGKSLEI-QKPAVAPRHGLQ 49   

                   SLGKvAniaRRMPPPAnLPSLkAENkGnDPnvpiVPkDGTGWAskqeqnd
                   SLGKvA iaRRMPPPAnLPSLkAENkGnDPnv++VPkDGTGWAskqeq+d
     hj06729    50 SLGKVA-IARRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSD 98   

                   pksspatptqpppaqPkPgvqqpasnLqpprqsiaqENTneVpsgpKSWa
                   pkss+a+++qp ++qP+P++q+pasn qp+r+++a+ENT++Vpsg+KSWa
     hj06729    99 PKSSDASTAQPLESQPLPASQTPASN-QPKRPPAAPENTPLVPSGVKSWA 147  

                   qasnkegghgdGlqansrllrfsaeEFPsLqAPAgDqDKankekeitdsS
                   qas+++g+hgdG++a+s+l+rfs+eEFP+LqA AgDqDKa+ke+e++++S
     hj06729   148 QASVTHGAHGDGGRASSLLSRFSREEFPTLQA-AGDQDKAAKERESAEQS 196  

                   <-*
                      
     hj06729     -     -    

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