hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-18281509/chunk_1/iprscan-20080812-18281509.nocrc
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Query sequence: hj06843
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00225.13.ls Kinesin motor domain                           585.0   6.5e-173   1
PF00225.13.fs Kinesin motor domain                           583.3   2.1e-172   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00225.13.fs   1/1      34   384 ..     1   424 []   583.3 2.1e-172
PF00225.13.ls   1/1      34   384 ..     1   424 []   585.0 6.5e-173

Alignments of top-scoring domains:
PF00225.13.fs: domain 1 of 1, from 34 to 384: score 583.3, E = 2.1e-172
                   *->RvRPlnerEksrgssdvvnv.....sedvessvitn.gkektFtFDk
                      R+RPl+ +E+++g++++++++ + +  + ++ +   ++ +ktFtFD+
     hj06843    34    RCRPLSRKEEAAGHEQILTMdvklgQVTLRNPRAAPgELPKTFTFDA 80   

                   VFdpeatQelsepYAsqefvyestakplvesvleGyNvtIFAYGQTGSGK
                   V+d ++          q ++y++t++pl++svl+G+N+t+FAYGQTG+GK
     hj06843    81 VYDASSK---------QADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGK 121  

                   TYTMeGstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkp
                   TYTM+G+      ++        ++e +G+iP a+e++F +i++ +    
     hj06843   122 TYTMQGT------WV--------EPELRGVIPNAFEHIFTHISRSQ---- 153  

                   vfKPklnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEI
                                                        +++++v++SylEI
     hj06843   154 -------------------------------------NQQYLVRASYLEI 166  

                   YNEkirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkG
                   Y+E+irDLLs++p            +k+  L+++e+p++G     vy+k+
     hj06843   167 YQEEIRDLLSKEP------------GKR--LELKENPETG-----VYIKD 197  

                   LteveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrnt
                   L++++ +++ e+ ++++lGn+ R+v+sT+mNe SSRSHaiF+itve +++
     hj06843   198 LSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSER 247  

                   dttgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatg.........
                   +++g+          +++rv+kLnLVDLAGSER+ k+g  + ++  ++++
     hj06843   248 GSDGQ----------DHIRVGKLNLVDLAGSERQNKAGPNTaggaatpss 287  

                   ............AggrRLkEaanINkSLsaLGnVInALadnqkssHiPYR
                   ++++++++++++Agg+R kEa++IN+SLsaLGnVI+ALa n +s+HiPYR
     hj06843   288 ggggggggsgggAGGERPKEASKINLSLSALGNVIAALAGN-RSTHIPYR 336  

                   DSKLTrLLQDSLGGGDNsKTlMIaniSPsssrNntnyeETLsTLrFAsRA
                   DSKLTrLLQDSLGG  N+KT+M+a++ P+s+    +y+E+LsTLrFA+RA
     hj06843   337 DSKLTRLLQDSLGG--NAKTIMVATLGPASH----SYDESLSTLRFANRA 380  

                   KnIk<-*
                   KnIk   
     hj06843   381 KNIK    384  

PF00225.13.ls: domain 1 of 1, from 34 to 384: score 585.0, E = 6.5e-173
                   *->RvRPlnerEksrgssdvvnv.....sedvessvitn.gkektFtFDk
                      R+RPl+ +E+++g++++++++ + +  + ++ +   ++ +ktFtFD+
     hj06843    34    RCRPLSRKEEAAGHEQILTMdvklgQVTLRNPRAAPgELPKTFTFDA 80   

                   VFdpeatQelsepYAsqefvyestakplvesvleGyNvtIFAYGQTGSGK
                   V+d ++          q ++y++t++pl++svl+G+N+t+FAYGQTG+GK
     hj06843    81 VYDASSK---------QADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGK 121  

                   TYTMeGstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkp
                   TYTM+G+      ++        ++e +G+iP a+e++F +i++ +    
     hj06843   122 TYTMQGT------WV--------EPELRGVIPNAFEHIFTHISRSQ---- 153  

                   vfKPklnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEI
                                                        +++++v++SylEI
     hj06843   154 -------------------------------------NQQYLVRASYLEI 166  

                   YNEkirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkG
                   Y+E+irDLLs++p            +k+  L+++e+p++G     vy+k+
     hj06843   167 YQEEIRDLLSKEP------------GKR--LELKENPETG-----VYIKD 197  

                   LteveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrnt
                   L++++ +++ e+ ++++lGn+ R+v+sT+mNe SSRSHaiF+itve +++
     hj06843   198 LSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSER 247  

                   dttgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatg.........
                   +++g+          +++rv+kLnLVDLAGSER+ k+g  + ++  ++++
     hj06843   248 GSDGQ----------DHIRVGKLNLVDLAGSERQNKAGPNTaggaatpss 287  

                   ............AggrRLkEaanINkSLsaLGnVInALadnqkssHiPYR
                   ++++++++++++Agg+R kEa++IN+SLsaLGnVI+ALa n +s+HiPYR
     hj06843   288 ggggggggsgggAGGERPKEASKINLSLSALGNVIAALAGN-RSTHIPYR 336  

                   DSKLTrLLQDSLGGGDNsKTlMIaniSPsssrNntnyeETLsTLrFAsRA
                   DSKLTrLLQDSLGG  N+KT+M+a++ P+s+    +y+E+LsTLrFA+RA
     hj06843   337 DSKLTRLLQDSLGG--NAKTIMVATLGPASH----SYDESLSTLRFANRA 380  

                   KnIk<-*
                   KnIk   
     hj06843   381 KNIK    384  

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