hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-18281509/chunk_1/iprscan-20080812-18281509.nocrc
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Query sequence: hj06843
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00129                                                 585.2   2.4e-171   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00129     1/1      26   391 ..     1   404 []   585.2 2.4e-171

Alignments of top-scoring domains:
SM00129: domain 1 of 1, from 26 to 391: score 585.2, E = 2.4e-171
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv.....tvtvn..
                       ++ +V+ R+   RPl+++E++ +    +  ++t++ + ++vt++++
     hj06843    26    SEALKVVARC---RPLSRKEEAAG----HEQILTMdvklgQVTLRnp 65   

                   ..........FtFDkVFWrydvddpsasQedVFeevaaPLvdsaldGYNv
                   +  +++ +++FtFD V+      d+s+ Q d ++e+++PL+ds+l+G+N+
     hj06843    66 raapgelpktFTFDAVY------DASSKQADLYDETVRPLIDSVLQGFNG 109  

                   aTIFAYGQTGSGKTyTMsGtptdpgilsndladitpdepGiIPRaledlF
                    T+FAYGQTG+GKTyTM Gt            ++ p+ +G+IP a+e++F
     hj06843   110 -TVFAYGQTGTGKTYTMQGT------------WVEPELRGVIPNAFEHIF 146  

                   ekide.....fsVkvSylEIYNEkirDLLspspenSksrGkhakqsskkk
                   ++i ++++++++V++SylEIY+E+irDLLs++p               k+
     hj06843   147 THISRsqnqqYLVRASYLEIYQEEIRDLLSKEPG--------------KR 182  

                   LrirEdkngnrhdapkLtrlrgqggvyVvGLtevsVsSaeevlellerGn
                   L+++E++                 gvy+++L+ ++ +++ e+++++++Gn
     hj06843   183 LELKENPE---------------TGVYIKDLSSFVTKNVKEIEHVMNLGN 217  

                   knRtvaaTkmNeeSSRSHaiFtitleqkeklepiadektesstnegteqi
                   + R+v++T+mNe SSRSHaiF+it+e               +  +g + i
     hj06843   218 QTRAVGSTHMNEVSSRSHAIFIITVECS------------ERGSDGQDHI 255  

                   ksskLnLVDLAGSERaskTg....................s..eaeGdRL
                   +++kLnLVDLAGSER++k+g+++ ++  ++++++++++++s++ a G+R 
     hj06843   256 RVGKLNLVDLAGSERQNKAGpntaggaatpssggggggggSggGAGGERP 305  

                   kEaqnINkSLlaLGnVInALaddshdsaeseatkqaggkssHIPYRDSKL
                   kEa +IN+SL+aLGnVI+ALa                 +s+HIPYRDSKL
     hj06843   306 KEASKINLSLSALGNVIAALAG---------------NRSTHIPYRDSKL 340  

                   TrLLQdSLGGNsKTlMIanvSPsssnyeETlsTLrFAsRaksIknkpavn
                   TrLLQdSLGGN+KT+M+a++ P+s +y+E+lsTLrFA+Rak+Iknkp vn
     hj06843   341 TRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAKNIKNKPRVN 390  

                   e<-*
                   e   
     hj06843   391 E    391  

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