hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-18333258/chunk_1/iprscan-20080812-18333258.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj06848 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00008.17.fs EGF-like domain 391.7 1e-114 35 PF00008.17.ls EGF-like domain 362.3 7e-106 24 PF07974.3.fs EGF-like domain 279.4 6.6e-81 29 PF07974.3.ls EGF-like domain 271.8 1.2e-78 20 PF00053.14.fs Laminin EGF-like (Domains III and V) 197.9 1.1e-56 18 PF07645.6.fs Calcium binding EGF domain 174.2 3.5e-52 12 PF07645.6.ls Calcium binding EGF domain 147.9 2.4e-41 4 PF00053.14.ls Laminin EGF-like (Domains III and V) 108.1 2.4e-29 11 PF01414.9.fs Delta serrate ligand 68.0 3.7e-20 17 PF01826.8.fs Trypsin Inhibitor like cysteine rich doma 47.3 1.2e-14 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07645.6.fs 1/12 73 112 .. 1 55 [] 33.6 2e-09 PF07645.6.ls 1/4 73 112 .. 1 55 [] 35.3 2e-07 PF00008.17.fs 1/35 77 112 .. 1 38 [] 33.3 2e-08 PF00008.17.ls 1/24 77 112 .. 1 38 [] 35.2 2.1e-07 PF00008.17.fs 2/35 118 154 .. 1 38 [] 30.2 1.5e-07 PF00008.17.ls 2/24 118 154 .. 1 38 [] 32.1 1.8e-06 PF00008.17.fs 3/35 160 195 .. 1 38 [] 34.2 1.1e-08 PF00008.17.ls 3/24 160 195 .. 1 38 [] 36.1 1.1e-07 PF07645.6.fs 4/12 197 236 .. 1 55 [] 54.1 1.1e-15 PF07645.6.ls 2/4 197 236 .. 1 55 [] 55.8 1.3e-13 PF00008.17.ls 4/24 201 236 .. 1 38 [] 24.6 0.00032 PF00008.17.ls 5/24 247 282 .. 1 38 [] 30.5 5.5e-06 PF00008.17.fs 5/35 247 282 .. 1 38 [] 28.6 4.3e-07 PF07645.6.ls 4/4 324 363 .. 1 55 [] 41.9 2e-09 PF07645.6.fs 7/12 324 363 .. 1 55 [] 40.2 1.9e-11 PF00008.17.ls 7/24 328 363 .. 1 38 [] 28.1 2.9e-05 PF00008.17.fs 7/35 328 363 .. 1 38 [] 26.2 2e-06 PF07974.3.ls 4/20 480 506 .. 1 37 [] 23.5 0.00071 PF00053.14.fs 2/18 480 516 .. 1 49 [. 21.1 1.9e-05 PF00053.14.ls 1/11 480 519 .. 1 59 [] 17.2 0.00039 PF07974.3.ls 5/20 523 549 .. 1 37 [] 22.9 0.001 PF00053.14.ls 4/11 701 738 .. 1 59 [] 15.8 0.00054 PF00053.14.fs 7/18 703 744 .. 6 59 .] 19.7 4.9e-05 PF00053.14.ls 5/11 742 781 .. 1 59 [] 9.9 0.0021 PF00053.14.fs 9/18 785 825 .. 1 59 [] 20.3 3.2e-05 PF00053.14.ls 6/11 785 825 .. 1 59 [] 21.9 0.00013 PF00053.14.ls 7/11 829 872 .. 1 59 [] 7.5 0.0037 PF00008.17.ls 18/24 911 941 .. 1 38 [] 20.4 0.0061 PF00053.14.fs 12/18 918 941 .. 5 40 .. 15.1 0.001 PF00053.14.ls 9/11 958 997 .. 1 59 [] 14.1 0.00079 PF07974.3.ls 16/20 1001 1027 .. 1 37 [] 25.1 0.00023 PF00053.14.fs 15/18 1044 1072 .. 1 42 [. 19.0 7.3e-05 PF00053.14.fs 17/18 1130 1158 .. 1 42 [. 19.3 6.2e-05 PF00053.14.fs 18/18 1182 1208 .. 1 40 [. 16.7 0.00036 Alignments of top-scoring domains: PF07645.6.fs: domain 1 of 12, from 73 to 112: score 33.6, E = 2e-09 *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse DvDEC++ C CvNt GS+ C+ C++G++ hj06848 73 DVDECRTHN-GGC-----QHRCVNTPGSYLCE----CKPGFR----- 104 nnedgtnC<-* +d+ +C hj06848 105 LHTDSRTC 112 PF07645.6.ls: domain 1 of 4, from 73 to 112: score 35.3, E = 2e-07 *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse DvDEC++ C CvNt GS+ C+ C++G++ hj06848 73 DVDECRTHN-GGC-----QHRCVNTPGSYLCE----CKPGFR----- 104 nnedgtnC<-* +d+ +C hj06848 105 LHTDSRTC 112 PF00008.17.fs: domain 1 of 35, from 77 to 112: score 33.3, E = 2e-08 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C +ng+C++ +Cv+tpg+y CeC+pG++l+ + ++C hj06848 77 CRTHNGGCQH--RCVNTPGSYLCECKPGFRLHTDSRTC 112 PF00008.17.ls: domain 1 of 24, from 77 to 112: score 35.2, E = 2.1e-07 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C +ng+C++ +Cv+tpg+y CeC+pG++l+ + ++C hj06848 77 CRTHNGGCQH--RCVNTPGSYLCECKPGFRLHTDSRTC 112 PF00008.17.fs: domain 2 of 35, from 118 to 154: score 30.2, E = 1.5e-07 *->CspnngpCsngGtCvdtp.ggytCeCppGyfllytGkrC<-* C+ ng+C++ Cv++ + ++C+C pG++l+ +G++C hj06848 118 CALGNGGCQH--HCVQLTiTRHRCQCRPGFQLQEDGRHC 154 PF00008.17.ls: domain 2 of 24, from 118 to 154: score 32.1, E = 1.8e-06 *->CspnngpCsngGtCvdtp.ggytCeCppGyfllytGkrC<-* C+ ng+C++ Cv++ + ++C+C pG++l+ +G++C hj06848 118 CALGNGGCQH--HCVQLTiTRHRCQCRPGFQLQEDGRHC 154 PF00008.17.fs: domain 3 of 35, from 160 to 195: score 34.2, E = 1.1e-08 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C+ ng C++ +C+ ++g +CeC++Gy+l+ +Gk C hj06848 160 CANRNGSCMH--RCQVVRGLARCECHVGYQLAADGKAC 195 PF00008.17.ls: domain 3 of 24, from 160 to 195: score 36.1, E = 1.1e-07 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C+ ng C++ +C+ ++g +CeC++Gy+l+ +Gk C hj06848 160 CANRNGSCMH--RCQVVRGLARCECHVGYQLAADGKAC 195 PF07645.6.fs: domain 4 of 12, from 197 to 236: score 54.1, E = 1.1e-15 *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse DvDECa g + C + C+Nt+GSF+Cv C +GYe hj06848 197 DVDECAAGL-AQC-----AHGCLNTQGSFKCV----CHAGYE----- 228 nnedgtnC<-* ++dg +C hj06848 229 LGADGRQC 236 PF07645.6.ls: domain 2 of 4, from 197 to 236: score 55.8, E = 1.3e-13 *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse DvDECa g + C + C+Nt+GSF+Cv C +GYe hj06848 197 DVDECAAGL-AQC-----AHGCLNTQGSFKCV----CHAGYE----- 228 nnedgtnC<-* ++dg +C hj06848 229 LGADGRQC 236 PF00008.17.ls: domain 4 of 24, from 201 to 236: score 24.6, E = 0.00032 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C+ C + C++t+g+++C C+ Gy l+ +G++C hj06848 201 CAAGLAQCAH--GCLNTQGSFKCVCHAGYELGADGRQC 236 PF00008.17.ls: domain 5 of 24, from 247 to 282: score 30.5, E = 5.5e-06 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C nng+Cs+ C t g+ C Cp Gy l+ ++++C hj06848 247 CEANNGGCSH--GCSHTSAGPLCTCPRGYELDTDQRTC 282 PF00008.17.fs: domain 5 of 35, from 247 to 282: score 28.6, E = 4.3e-07 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C nng+Cs+ C t g+ C Cp Gy l+ ++++C hj06848 247 CEANNGGCSH--GCSHTSAGPLCTCPRGYELDTDQRTC 282 PF07645.6.ls: domain 4 of 4, from 324 to 363: score 41.9, E = 2e-09 *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse DvDECa+ + C +C+N GSF+C+ C++GY+ hj06848 324 DVDECASSR-GGC-----EHHCTNLAGSFQCS----CEAGYR----- 355 nnedgtnC<-* ed+ C hj06848 356 LHEDRRGC 363 PF07645.6.fs: domain 7 of 12, from 324 to 363: score 40.2, E = 1.9e-11 *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse DvDECa+ + C +C+N GSF+C+ C++GY+ hj06848 324 DVDECASSR-GGC-----EHHCTNLAGSFQCS----CEAGYR----- 355 nnedgtnC<-* ed+ C hj06848 356 LHEDRRGC 363 PF00008.17.ls: domain 7 of 24, from 328 to 363: score 28.1, E = 2.9e-05 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C++ g+C + C+++ g+++C C Gy+l+ + + C hj06848 328 CASSRGGCEH--HCTNLAGSFQCSCEAGYRLHEDRRGC 363 PF00008.17.fs: domain 7 of 35, from 328 to 363: score 26.2, E = 2e-06 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C++ g+C + C+++ g+++C C Gy+l+ + + C hj06848 328 CASSRGGCEH--HCTNLAGSFQCSCEAGYRLHEDRRGC 363 PF07974.3.ls: domain 4 of 20, from 480 to 506: score 23.5, E = 0.00071 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C++ +GtC+s +g C C++g +G C hj06848 480 CsCQN-GGTCDSV------TGACRCPPG----VSGTNC 506 PF00053.14.fs: domain 2 of 18, from 480 to 516: score 21.1, E = 1.9e-05 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr.CkpG C C + G tCds +tG+C+ C p+v+G++C+ +C G hj06848 480 CSCQNGG-----TCDS-------VTGACR-CPPGVSGTNCEDgCPKG 513 yyg<-* yyg hj06848 514 YYG 516 PF00053.14.ls: domain 1 of 11, from 480 to 519: score 17.2, E = 0.00039 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr.CkpG C C + G tCds +tG+C+ C p+v+G++C+ +C G hj06848 480 CSCQNGG-----TCDS-------VTGACR-CPPGVSGTNCEDgCPKG 513 yyglpsgdpgqgC<-* yyg C hj06848 514 YYGK-------HC 519 PF07974.3.ls: domain 5 of 20, from 523 to 549: score 22.9, E = 0.001 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C + +G+C++ +g+ C Cd+g +G C hj06848 523 CnCAN-RGRCHRLYGA------CLCDPG----LYGRFC 549 PF00053.14.ls: domain 4 of 11, from 701 to 738: score 15.8, E = 0.00054 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrC.drCkpG C+ h+ ++Cd+ etG+Cl C+p++ G rC+d C G hj06848 701 CQ---HA----ARCDP-------ETGACL-CLPGFVGSRCqDVCPAG 732 yyglpsgdpgqgC<-* yg + +C hj06848 733 WYG------P-SC 738 PF00053.14.fs: domain 7 of 18, from 703 to 744: score 19.7, E = 4.9e-05 *->hGslsddtCdsddelfgeetGqClkCkpnvtGrrC.drCkpGyyglp h+ ++Cd+ etG+Cl C+p++ G rC+d C G yg p hj06848 703 HA----ARCDP-------ETGACL-CLPGFVGSRCqDVCPAGWYG-P 736 sg.dpgqgC<-* s+++ + +C hj06848 737 SCqTRC-SC 744 PF00053.14.ls: domain 5 of 11, from 742 to 781: score 9.9, E = 0.0021 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr.CkpG C C + G +C++ tG+C+ C p+ tG C r C G hj06848 742 CSCANDG-----HCHP-------ATGHCS-CAPGWTGFSCQRaCDTG 775 yyglpsgdpgqgC<-* ++g + +C hj06848 776 HWG------P-DC 781 PF00053.14.fs: domain 9 of 18, from 785 to 825: score 20.3, E = 3.2e-05 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCd.rCkpG C+C+ ++Cd ++G Cl C ++ G+rC+++C G hj06848 785 CNCSAGH----GSCDA-------ISGLCL-CEAGYVGPRCEqQCPQG 819 yyglpsgdpgqgC<-* ++ +pg C hj06848 820 HF-----GPG--C 825 PF00053.14.ls: domain 6 of 11, from 785 to 825: score 21.9, E = 0.00013 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCd.rCkpG C+C+ ++Cd ++G Cl C ++ G+rC+++C G hj06848 785 CNCSAGH----GSCDA-------ISGLCL-CEAGYVGPRCEqQCPQG 819 yyglpsgdpgqgC<-* ++ +pg C hj06848 820 HF-----GPG--C 825 PF00053.14.ls: domain 7 of 11, from 829 to 872: score 7.5, E = 0.0037 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr.CkpG C+C hG + Cd ++G+C C + G+ C++ C G hj06848 829 CQC-QHG----AACDH-------VSGACT-CPAGWRGTFCEHaCPAG 862 yyglpsgdpgqgC<-* ++gl d + C hj06848 863 FFGL---DCRSAC 872 PF00008.17.ls: domain 18 of 24, from 911 to 941: score 20.4, E = 0.0061 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C +C+ngG C + + +C Cp G +tG++C hj06848 911 CRHSG-GCLNGGLCDPH--TGRCLCPAG----WTGDKC 941 PF00053.14.fs: domain 12 of 18, from 918 to 941: score 15.1, E = 0.001 *->phGslsddtCdsddelfgeetGqClkCkpnvtGrrC<-* ++G + Cd+ +tG+Cl C + tG++C hj06848 918 LNG----GLCDP-------HTGRCL-CPAGWTGDKC 941 PF00053.14.ls: domain 9 of 11, from 958 to 997: score 14.1, E = 0.00079 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr.CkpG C C+p++ C+ +tG+C+ C p++tG C+++C pG hj06848 958 CSCPPAA-----ACHH-------VTGACR-CPPGFTGSGCEQgCPPG 991 yyglpsgdpgqgC<-* y +pg C hj06848 992 RY-----GPG--C 997 PF07974.3.ls: domain 16 of 20, from 1001 to 1027: score 25.1, E = 0.00023 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C + +G C+ +g C C+ g + G dC hj06848 1001 CgCLN-GGSCDAA------TGACRCPTG----FLGTDC 1027 PF00053.14.fs: domain 15 of 18, from 1044 to 1072: score 19.0, E = 7.3e-05 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr<-* C C ++G + Cd+ +tG Cl C p+ +G rC+r hj06848 1044 CGC-GQG----AACDP-------VTGTCL-CPPGRAGVRCER 1072 PF00053.14.fs: domain 17 of 18, from 1130 to 1158: score 19.3, E = 6.2e-05 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdr<-* C C++++ tC + tG C+ C p+++G+ C++ hj06848 1130 CSCHNNS-----TCEP-------ATGTCR-CGPGFYGQACEH 1158 PF00053.14.fs: domain 18 of 18, from 1182 to 1208: score 16.7, E = 0.00036 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrC<-* CdC + + +Cd+ ++GqC+ C ++++G+ C hj06848 1182 CDCGGGA-----DCDP-------VSGQCH-CVDGYMGPTC 1208 //