hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-18333258/chunk_1/iprscan-20080812-18333258.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj06848 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00181 455.8 2.2e-132 25 SM00180 263.6 1.6e-74 17 SM00179 210.5 1.5e-58 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00179 1/7 73 113 .. 1 34 [] 56.7 3e-12 SM00181 1/25 76 113 .. 1 32 [] 33.8 2.3e-05 SM00179 2/7 114 155 .. 1 34 [] 18.9 0.0077 SM00181 2/25 117 155 .. 1 32 [] 29.0 0.00064 SM00181 3/25 159 196 .. 1 32 [] 24.0 0.021 SM00179 3/7 160 196 .. 1 34 [] 0.0 1.7 SM00179 4/7 197 237 .. 1 34 [] 49.2 5.4e-10 SM00181 4/25 200 237 .. 1 32 [] 25.8 0.0062 SM00179 5/7 244 283 .. 1 34 [] 4.4 0.48 SM00181 5/25 246 283 .. 1 32 [] 21.2 0.15 SM00179 6/7 284 321 .. 1 34 [] 34.3 1.7e-05 SM00181 6/25 287 323 .. 1 32 [] 12.4 21 SM00179 7/7 324 364 .. 1 34 [] 47.0 2.4e-09 SM00181 7/25 327 364 .. 1 32 [] 28.0 0.0013 SM00181 8/25 431 464 .. 1 32 [] 17.3 2.1 SM00181 9/25 475 507 .. 1 32 [] 18.6 0.87 SM00180 1/17 480 519 .. 1 42 [] 27.4 0.002 SM00181 10/25 518 550 .. 1 32 [] 4.3 1e+02 SM00180 2/17 523 562 .. 1 42 [] 11.7 0.97 SM00181 11/25 552 595 .. 1 32 [] 8.8 43 SM00180 3/17 566 607 .. 1 42 [] 26.2 0.0045 SM00181 12/25 597 640 .. 1 32 [] 4.7 97 SM00180 4/17 611 652 .. 1 42 [] 6.6 2.5 SM00181 13/25 651 682 .. 1 32 [] 16.7 3.2 SM00180 5/17 656 694 .. 1 42 [] 26.5 0.0038 SM00181 14/25 693 726 .. 1 32 [] 17.3 2.2 SM00180 6/17 698 738 .. 1 42 [] 10.1 1.3 SM00181 15/25 737 769 .. 1 32 [] 22.3 0.066 SM00180 7/17 742 781 .. 1 42 [] 20.3 0.19 SM00181 16/25 780 813 .. 1 32 [] 19.9 0.36 SM00180 8/17 785 825 .. 1 42 [] 36.1 4.7e-06 SM00181 17/25 824 856 .. 1 32 [] 19.7 0.4 SM00180 9/17 829 868 .. 1 42 [] 12.0 0.91 SM00181 18/25 867 899 .. 1 32 [] 10.9 28 SM00180 10/17 872 911 .. 1 42 [] 12.2 0.88 SM00181 19/25 910 942 .. 1 32 [] 24.9 0.011 SM00180 11/17 916 954 .. 1 42 [] 5.2 3.2 SM00181 20/25 953 985 .. 1 32 [] 16.1 5.1 SM00180 12/17 958 997 .. 1 42 [] 16.9 0.37 SM00181 21/25 996 1028 .. 1 32 [] 13.1 18 SM00180 13/17 1001 1040 .. 1 42 [] 5.9 2.8 SM00181 22/25 1039 1071 .. 1 32 [] 16.0 5.2 SM00180 14/17 1044 1083 .. 1 42 [] 19.0 0.25 SM00181 23/25 1082 1114 .. 1 32 [] 17.5 1.9 SM00180 15/17 1087 1126 .. 1 42 [] 12.8 0.77 SM00181 24/25 1125 1157 .. 1 32 [] 17.7 1.7 SM00180 16/17 1130 1178 .. 1 42 [] 10.3 1.3 SM00181 25/25 1177 1209 .. 1 32 [] 15.5 7.4 SM00180 17/17 1182 1210 .. 1 42 [] 4.3 3.8 Alignments of top-scoring domains: SM00179: domain 1 of 7, from 73 to 113: score 56.7, E = 3e-12 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< D+DEC+++++ Cq+ +C+N++GSY C+C+pG++ ++++r+C hj06848 73 DVDECrthngGCQH-----RCVNtPGSYLCeCKPGFRlhtdsRTCL 113 -* hj06848 - - SM00181: domain 1 of 25, from 76 to 113: score 33.8, E = 2.3e-05 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eC +++++C++ +C+++++sy C+C+ pG+++++++++C hj06848 76 ECRthngGCQH-------RCVntpgSYLCeCK-PGFRLhtdsrTCL 113 -* hj06848 - - SM00179: domain 2 of 7, from 114 to 155: score 18.9, E = 0.0077 *->DiDEC.....pCqnGGptgtCiN..vGSYrC.CppGyt.....rnCe i+ C +++ Cq+ +C+ ++ rC+C+pG++ + ++r+C+ hj06848 114 AINSCalgngGCQH-----HCVQltITRHRCqCRPGFQlqedgRHCV 155 <-* hj06848 - - SM00181: domain 2 of 25, from 117 to 155: score 29.0, E = 0.00064 *->eCa....pCsnGgtEqnGtCi.....sytC.CpgpGytg.....rCe Ca ++++C++ +C+ + + ++C+C+ pG+++++++++C+ hj06848 117 SCAlgngGCQH-------HCVqltitRHRCqCR-PGFQLqedgrHCV 155 <-* hj06848 - - SM00181: domain 3 of 25, from 159 to 196: score 24.0, E = 0.021 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< +Ca++++ C + +C+ ++ +C+C+ Gy++ +++ Ce hj06848 159 PCAnrngSCMH-------RCQvvrgLARCeCH-VGYQLaadgkACE 196 -* hj06848 - - SM00179: domain 3 of 7, from 160 to 196: score 0.0, E = 1.7 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< C ++++ C + +C+ G rC+C+ Gy+ +++ Ce hj06848 160 ----CanrngSCMH-----RCQVvRGLARCeCHVGYQlaadgKACE 196 -* hj06848 - - SM00179: domain 4 of 7, from 197 to 237: score 49.2, E = 5.4e-10 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< D+DEC + C + C N+ GS++C C++Gy+ + ++r+C hj06848 197 DVDECaaglaQCAH-----GCLNtQGSFKCvCHAGYElgadgRQCY 237 -* hj06848 - - SM00181: domain 4 of 25, from 200 to 237: score 25.8, E = 0.0062 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eCa + C +G C+++ +s++C C+ +Gy+++ ++++C hj06848 200 ECAaglaQCAHG-------CLntqgSFKCvCH-AGYELgadgrQCY 237 -* hj06848 - - SM00179: domain 5 of 7, from 244 to 283: score 4.4, E = 0.48 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< ++ C+ +++ C++ C + + C+Cp Gy+ ++++r+C+ hj06848 244 -VNSCeanngGCSH-----GCSHtSAGPLCtCPRGYEldtdqRTCI 283 -* hj06848 - - SM00181: domain 5 of 25, from 246 to 283: score 21.2, E = 0.15 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< C+ ++++Cs+G C +++ ++ C+Cp Gy++++++++C+ hj06848 246 SCEanngGCSHG-------CShtsaGPLCtCP-RGYELdtdqrTCI 283 -* hj06848 - - SM00179: domain 6 of 7, from 284 to 321: score 34.3, E = 1.7e-05 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt...rnCe<-* D+D+C ++pC + +C+N++G+Y+C+C +Gy+ + C hj06848 284 DVDDCadsPCCQQ----VCTNnPGGYECgCYAGYRlsaDGCG 321 SM00181: domain 6 of 25, from 287 to 323: score 12.4, E = 21 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<-* +Ca++pC + ++C++++++y+C+C +Gy+++ ++ Ce hj06848 287 DCAdsPCCQ------QVCTnnpgGYECgCY-AGYRLsadgcGCE 323 SM00179: domain 7 of 7, from 324 to 364: score 47.0, E = 2.4e-09 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< D+DEC ++++ C + +C+N GS++C+C +Gy+ + ++r C hj06848 324 DVDECassrgGCEH-----HCTNlAGSFQCsCEAGYRlhedrRGCS 364 -* hj06848 - - SM00181: domain 7 of 25, from 327 to 364: score 28.0, E = 0.0013 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eCa+++++C++ +C++ +s++C+C +Gy+++++++ C hj06848 327 ECAssrgGCEH-------HCTnlagSFQCsCE-AGYRLhedrrGCS 364 -* hj06848 - - SM00181: domain 8 of 25, from 431 to 464: score 17.3, E = 2.1 *->eCa....pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* +C+ + ++C nG GtC+ + C+Cp +G+tg C hj06848 431 DCSltcdDCRNG-----GTCLlgLDGCdCP-EGWTGlICN 464 SM00181: domain 9 of 25, from 475 to 507: score 18.6, E = 0.87 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+ + C+nG GtC + + C+Cp pG +g++Ce hj06848 475 NCSfscSCQNG-----GTCDsvTGACrCP-PGVSGtNCE 507 SM00180: domain 1 of 17, from 480 to 519: score 27.4, E = 0.002 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C C +G+Cd+ tG C+ C p++ G +C+d C Gyy+++C hj06848 480 CSCQ---NGGtCDSvTGACR-CPPGVSG-TNCEDG-CPKGYYgkHC 519 -* hj06848 - - SM00181: domain 10 of 25, from 518 to 550: score 4.3, E = 1e+02 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C ++ C n G+C++ C C pG +g+ C hj06848 518 HCRkkcNCANR-----GRCHrlYGAClCD-PGLYGrFCH 550 SM00180: domain 2 of 17, from 523 to 562: score 11.7, E = 0.97 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C+C +G+C++ G Cl C p+ G r C C p +++gC hj06848 523 CNCA---NRGrCHRlYGACL-CDPGLYG-RFCHL-TCPPWAFgpGC 562 -* hj06848 - - SM00181: domain 11 of 25, from 552 to 595: score 8.8, E = 43 *->eCa......pCsnGgtEqnGtCi............sytC.CpgpGyt C + +++Cs+ +C+ +++ + +++ +C+C+ +G++ hj06848 552 TCPpwafgpGCSE-------ECQcvqphtqscdkrDGSCsCK-AGFR 590 g.rCe<-* g+rC+ hj06848 591 GeRCQ 595 SM00180: domain 3 of 17, from 566 to 607: score 26.2, E = 0.0045 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyy..g C+C ++++Cd+++G C Ck + G +rC +e C+ Gy+++g hj06848 566 CQCV---QPHtqsCDKrDGSCS-CKAGFRG-ERCQAE-CELGYFgpG 606 C<-* C hj06848 607 C 607 SM00181: domain 12 of 25, from 597 to 640: score 4.7, E = 97 *->eCa......pCsnGgtEqnGtCi..........sytC...CpgpGyt eC+ + +++C + C+ + + ++ s +C+++Cp +G++ hj06848 597 ECElgyfgpGCWQ-------ACTcpvgvacdsvSGECgkrCP-AGFQ 635 g.rCe<-* g+ C hj06848 636 GeDCG 640 SM00180: domain 4 of 17, from 611 to 652: score 6.6, E = 2.5 *->CdCnlpppvG..Cdp.tGqC..lnCkpnttGGrrCdderCapGyy.. C C+ vG Cd+ +G C+++ C + +G + C +e C G ++ hj06848 611 CTCP----VGvaCDSvSGECgkR-CPAGFQG-EDCGQE-CPVGTFgv 650 gC<-* +C hj06848 651 NC 652 SM00181: domain 13 of 25, from 651 to 682: score 16.7, E = 3.2 *->eCa.pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C++ Cs Gg + C++ + +C+Cp pG tg+ Ce hj06848 651 NCSsSCSCGG----APCHgvTGQCrCP-PGRTGeDCE 682 SM00180: domain 5 of 17, from 656 to 694: score 26.5, E = 0.0038 *->CdCnlpppvG..Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC C C G +C+ tGqC+ C p+ tG + C+++ C +G ++ gC hj06848 656 CSCG-----GapCHGvTGQCR-CPPGRTG-EDCEAD-CPEGRWglGC 694 <-* hj06848 - - SM00181: domain 14 of 25, from 693 to 726: score 17.3, E = 2.2 *->eCa....pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C++ + C++ ++C +++ C C pG+ g+rC+ hj06848 693 GCQeicpACQHA-----ARCDpeTGAClCL-PGFVGsRCQ 726 SM00180: domain 6 of 17, from 698 to 738: score 10.1, E = 1.3 *->CdCnlpppvG....Cdp.tGqClnCkpnttGGrrCdderCapGyy.. C+ + + +Cdp+tG Cl C p+ +G rC d C G y++ hj06848 698 --CP---ACQhaarCDPeTGACL-CLPGFVG-SRCQDV-CPAGWYgp 736 gC<-* +C hj06848 737 SC 738 SM00181: domain 15 of 25, from 737 to 769: score 22.3, E = 0.066 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+++ C n+ G+C++ + +C+C+ pG+tg +C+ hj06848 737 SCQtrcSCAND-----GHCHpaTGHCsCA-PGWTGfSCQ 769 SM00180: domain 7 of 17, from 742 to 781: score 20.3, E = 0.19 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C C +G+C+p tG+C C p+ tG C ++ C G+++++C hj06848 742 CSCA---NDGhCHPaTGHCS-CAPGWTG-FSCQRA-CDTGHWgpDC 781 -* hj06848 - - SM00181: domain 16 of 25, from 780 to 813: score 19.9, E = 0.36 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* +C+++ Cs G +G C s C C +Gy g+rCe hj06848 780 DCShpcNCSAG----HGSCDaiSGLClCE-AGYVGpRCE 813 SM00180: domain 8 of 17, from 785 to 825: score 36.1, E = 4.7e-06 *->CdCnlpppvG..Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC C+C+ +++++Cd +G Cl C +++G +rC++ +C G++++gC hj06848 785 CNCS---AGHgsCDAiSGLCL-CEAGYVG-PRCEQ-QCPQGHFgpGC 825 <-* hj06848 - - SM00181: domain 17 of 25, from 824 to 856: score 19.7, E = 0.4 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C++ C++G + C + s C+Cp +G++g+ Ce hj06848 824 GCEqlcQCQHG-----AACDhvSGACtCP-AGWRGtFCE 856 SM00180: domain 9 of 17, from 829 to 868: score 12.0, E = 0.91 *->CdCnlpppvG..Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC C+C +G Cd +G C C + G C+ + C G+++ +C hj06848 829 CQCQ----HGaaCDHvSGACT-CPAGWRG-TFCEHA-CPAGFFglDC 868 <-* hj06848 - - SM00181: domain 18 of 25, from 867 to 899: score 10.9, E = 28 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* +C + C G + C +C Cp +G +g+rC hj06848 867 DCRsacNCTAG-----AACDavNGSClCP-AGRRGpRCA 899 SM00180: domain 10 of 17, from 872 to 911: score 12.2, E = 0.88 *->CdCnlpppvG..Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC C+C ++G Cd +G Cl C + G +rC e+C+p + gC hj06848 872 CNC----TAGaaCDAvNGSCL-CPAGRRG-PRCA-EKCLPRDVraGC 911 <-* hj06848 - - SM00181: domain 19 of 25, from 910 to 942: score 24.9, E = 0.011 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C ++++C nG G C +++ +C Cp +G+tg+ C+ hj06848 910 GCRhsgGCLNG-----GLCDphTGRClCP-AGWTGdKCQ 942 SM00180: domain 11 of 17, from 916 to 954: score 5.2, E = 3.2 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C +G Cdp+tG+Cl C + tG ++C C+ G +++ C hj06848 916 -GCL---NGGlCDPhTGRCL-CPAGWTG-DKCQSP-CLRGWFgeAC 954 -* hj06848 - - SM00181: domain 20 of 25, from 953 to 985: score 16.1, E = 5.1 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* Ca++ C + + C++ + C+Cp pG+tg+ Ce hj06848 953 ACAqrcSCPPA-----AACHhvTGACrCP-PGFTGsGCE 985 SM00180: domain 12 of 17, from 958 to 997: score 16.9, E = 0.37 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C C+ p+ C+ tG C+ C p+ tG C++ C pG y++gC hj06848 958 CSCP---PAAaCHHvTGACR-CPPGFTG-SGCEQG-CPPGRYgpGC 997 -* hj06848 - - SM00181: domain 21 of 25, from 996 to 1028: score 13.1, E = 18 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C++ +C nG G C + C+Cp G+ g+ C hj06848 996 GCEqlcGCLNG-----GSCDaaTGACrCP-TGFLGtDCN 1028 SM00180: domain 13 of 17, from 1001 to 1040: score 5.9, E = 2.8 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C C +G+Cd tG C+ C + G C+ C G ++++C hj06848 1001 CGCL---NGGsCDAaTGACR-CPTGFLG-TDCNL-TCPQGRFgpNC 1040 -* hj06848 - - SM00181: domain 22 of 25, from 1039 to 1071: score 16.0, E = 5.2 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C + +C++G + C + + tC Cp pG g rCe hj06848 1039 NCThvcGCGQG-----AACDpvTGTClCP-PGRAGvRCE 1071 SM00180: domain 14 of 17, from 1044 to 1083: score 19.0, E = 0.25 *->CdCnlpppvG..Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC C C +G Cdp tG Cl C p+ +G rC++ C + ++ gC hj06848 1044 CGCG----QGaaCDPvTGTCL-CPPGRAG-VRCERG-CPQNRFgvGC 1083 <-* hj06848 - - SM00181: domain 23 of 25, from 1082 to 1114: score 17.5, E = 1.9 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+++ C nG G C+ + +C+C G+tg++Ce hj06848 1082 GCEhtcSCRNG-----GLCHasNGSCsCG-LGWTGrHCE 1114 SM00180: domain 15 of 17, from 1087 to 1126: score 12.8, E = 0.77 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C C +G C+ ++G C C + tG r+C+ + C pG y+ C hj06848 1087 CSCR---NGGlCHAsNGSCS-CGLGWTG-RHCELA-CPPGRYgaAC 1126 -* hj06848 - - SM00181: domain 24 of 25, from 1125 to 1157: score 17.7, E = 1.7 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+ + C+n+ tC + + tC+C pG++g+ Ce hj06848 1125 ACHlecSCHNNS-----TCEpaTGTCrCG-PGFYGqACE 1157 SM00180: domain 16 of 17, from 1130 to 1178: score 10.3, E = 1.3 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdde........rC C C+ ++++C+p tG C+ C p+ G + C+ +++ + + C hj06848 1130 CSCH-----NnstCEPaTGTCR-CGPGFYG-QACEHRrsgatcnlDC 1169 apGyy..gC<-* + G ++++C hj06848 1170 RRGQFgpSC 1178 SM00181: domain 25 of 25, from 1177 to 1209: score 15.5, E = 7.4 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C + +C+ G + C + s +C+C +Gy+g++C hj06848 1177 SCTlhcDCGGG-----ADCDpvSGQChCV-DGYMGpTCR 1209 SM00180: domain 17 of 17, from 1182 to 1210: score 4.3, E = 3.8 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyygC< CdC G+ +Cdp +GqC+ C ++++G + C +e hj06848 1182 CDCG-----GgadCDPvSGQCH-CVDGYMG-PTC-RE--------- 1210 -* hj06848 - - //