# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ohj07171.fasta.nr -Q hj07171.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 hj07171, 490 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6833502 sequences Expectation_n fit: rho(ln(x))= 5.6704+/-0.000196; mu= 10.0807+/- 0.011 mean_var=101.2938+/-19.346, 0's: 28 Z-trim: 66 B-trim: 137 in 1/64 Lambda= 0.127433 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapi ( 516) 3318 620.4 3e-175 gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Clo ( 472) 3127 585.3 1e-164 gi|4003528|gb|AAC95154.1| retinoic acid receptor R ( 479) 3127 585.3 1e-164 gi|133701|sp|P19793.1|RXRA_HUMAN Retinoic acid rec ( 462) 3123 584.5 1.7e-164 gi|84579197|dbj|BAE73032.1| hypothetical protein [ ( 462) 3106 581.4 1.5e-163 gi|110781215|emb|CAL25727.1| retinoid X receptor a ( 467) 3062 573.3 4.1e-161 gi|464702|sp|Q05343.1|RXRA_RAT Retinoic acid recep ( 467) 3061 573.1 4.6e-161 gi|133702|sp|P28700.1|RXRA_MOUSE Retinoic acid rec ( 467) 3059 572.8 6e-161 gi|83026436|gb|ABB96254.1| retinoid X receptor, al ( 452) 3051 571.3 1.6e-160 gi|74194825|dbj|BAE26004.1| unnamed protein produc ( 467) 3047 570.6 2.8e-160 gi|114627460|ref|XP_520345.2| PREDICTED: hypotheti ( 601) 3048 570.8 2.9e-160 gi|194225999|ref|XP_001917400.1| PREDICTED: simila ( 587) 3002 562.4 1e-157 gi|149249157|ref|XP_001477381.1| PREDICTED: simila ( 629) 2995 561.1 2.6e-157 gi|148676425|gb|EDL08372.1| retinoid X receptor al ( 457) 2987 559.5 5.7e-157 gi|126297986|ref|XP_001372307.1| PREDICTED: simila ( 489) 2984 559.0 8.7e-157 gi|149039210|gb|EDL93430.1| retinoid X receptor al ( 439) 2900 543.5 3.6e-152 gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculu ( 439) 2899 543.3 4.1e-152 gi|149410285|ref|XP_001506054.1| PREDICTED: simila ( 433) 2852 534.7 1.6e-149 gi|109109847|ref|XP_001118265.1| PREDICTED: retino ( 450) 2795 524.2 2.4e-146 gi|1710719|sp|P51128.1|RXRA_XENLA Retinoic acid re ( 488) 2731 512.5 8.7e-143 gi|194671811|ref|XP_887036.3| PREDICTED: retinoid ( 404) 2675 502.1 9.6e-140 gi|189533916|ref|XP_001923873.1| PREDICTED: RXRalp ( 458) 2647 497.0 3.7e-138 gi|147732610|sp|A2T929.2|RXRAA_DANRE Retinoic acid ( 430) 2588 486.1 6.6e-135 gi|73967638|ref|XP_858806.1| PREDICTED: similar to ( 399) 2586 485.7 8e-135 gi|73967650|ref|XP_859036.1| PREDICTED: similar to ( 386) 2540 477.3 2.7e-132 gi|73967642|ref|XP_858879.1| PREDICTED: similar to ( 394) 2540 477.3 2.8e-132 gi|73967644|ref|XP_858917.1| PREDICTED: similar to ( 386) 2533 476.0 6.7e-132 gi|73967646|ref|XP_858958.1| PREDICTED: similar to ( 387) 2533 476.0 6.7e-132 gi|73967648|ref|XP_859001.1| PREDICTED: similar to ( 385) 2526 474.7 1.6e-131 gi|73967630|ref|XP_858650.1| PREDICTED: similar to ( 387) 2505 470.8 2.4e-130 gi|83638436|gb|ABC33911.1| retinoid X receptor alp ( 374) 2481 466.4 4.9e-129 gi|193785958|dbj|BAG54745.1| unnamed protein produ ( 365) 2464 463.3 4.2e-128 gi|68132036|gb|AAY85284.1| RXRalpha-B [Danio rerio ( 365) 2330 438.6 1.1e-120 gi|1583309|prf||2120366D retinoid X receptor:ISOTY ( 391) 2288 430.9 2.5e-118 gi|52783417|sp|Q90415.1|RXRAB_DANRE Retinoic acid ( 379) 2280 429.5 6.6e-118 gi|52788288|sp|Q90416.2|RXRGA_DANRE Retinoic acid ( 441) 2263 426.4 6.5e-117 gi|1046295|gb|AAC59720.1| retinoid X receptor alph ( 441) 2258 425.5 1.2e-116 gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE Retinoic acid ( 452) 2212 417.0 4.4e-114 gi|133700|sp|P28701.1|RXRG_CHICK Retinoic acid rec ( 467) 2199 414.7 2.3e-113 gi|126306269|ref|XP_001370409.1| PREDICTED: hypoth ( 467) 2193 413.6 5e-113 gi|75062013|sp|Q5REL6.1|RXRG_PONAB Retinoic acid r ( 463) 2165 408.4 1.8e-111 gi|113197752|gb|AAI21596.1| LOC779621 protein [Xen ( 452) 2162 407.8 2.6e-111 gi|1350914|sp|P28705.2|RXRG_MOUSE Retinoic acid re ( 463) 2162 407.9 2.6e-111 gi|1350913|sp|P48443.1|RXRG_HUMAN Retinoic acid re ( 463) 2162 407.9 2.6e-111 gi|109019325|ref|XP_001085084.1| PREDICTED: retino ( 463) 2161 407.7 3e-111 gi|1350911|sp|P28702.2|RXRB_HUMAN Retinoic acid re ( 533) 2160 407.5 3.7e-111 gi|167016572|sp|Q0GFF6.2|RXRG_PIG Retinoic acid re ( 463) 2159 407.3 3.8e-111 gi|148877301|gb|AAI46261.1| Retinoid X receptor, b ( 532) 2159 407.4 4.2e-111 gi|109070630|ref|XP_001108780.1| PREDICTED: simila ( 694) 2160 407.6 4.5e-111 gi|337720|gb|AAA60293.1| retinoid X receptor beta ( 533) 2157 407.0 5.5e-111 >>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens] (516 aa) initn: 3318 init1: 3318 opt: 3318 Z-score: 3301.5 bits: 620.4 E(): 3e-175 Smith-Waterman score: 3318; 100.000% identity (100.000% similar) in 490 aa overlap (1-490:27-516) 10 20 30 hj0717 RARAGRAGGRRARRPLPAPPAGHELVADMDTKHF :::::::::::::::::::::::::::::::::: gi|396 ATFATTRRAAASARRRRHRSRRLPAARARAGRAGGRRARRPLPAPPAGHELVADMDTKHF 10 20 30 40 50 60 40 50 60 70 80 90 hj0717 LPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|396 LPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS 70 80 90 100 110 120 100 110 120 130 140 150 hj0717 VISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|396 VISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGN 130 140 150 160 170 180 160 170 180 190 200 210 hj0717 MASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|396 MASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNR 190 200 210 220 230 240 220 230 240 250 260 270 hj0717 CQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|396 CQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKT 250 260 270 280 290 300 280 290 300 310 320 330 hj0717 ETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|396 ETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWN 310 320 330 340 350 360 340 350 360 370 380 390 hj0717 ELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|396 ELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTE 370 380 390 400 410 420 400 410 420 430 440 450 hj0717 LGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|396 LGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALR 430 440 450 460 470 480 460 470 480 490 hj0717 SIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT :::::::::::::::::::::::::::::::::::: gi|396 SIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT 490 500 510 >>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning (472 aa) initn: 3127 init1: 3127 opt: 3127 Z-score: 3112.3 bits: 585.3 E(): 1e-164 Smith-Waterman score: 3127; 99.784% identity (100.000% similar) in 463 aa overlap (28-490:10-472) 10 20 30 40 50 60 hj0717 RARAGRAGGRRARRPLPAPPAGHELVADMDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPS :.::::::::::::::::::::::::::::::: gi|993 MEQKLISEEDLDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPS 10 20 30 40 70 80 90 100 110 120 hj0717 LHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|993 LHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSP 50 60 70 80 90 100 130 140 150 160 170 180 hj0717 QLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|993 QLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSC 110 120 130 140 150 160 190 200 210 220 230 240 hj0717 EGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|993 EGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG 170 180 190 200 210 220 250 260 270 280 290 300 hj0717 KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|993 KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAA 230 240 250 260 270 280 310 320 330 340 350 360 hj0717 DKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|993 DKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHV 290 300 310 320 330 340 370 380 390 400 410 420 hj0717 HRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|993 HRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEAL 350 360 370 380 390 400 430 440 450 460 470 480 hj0717 REKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|993 REKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 410 420 430 440 450 460 490 hj0717 EMLEAPHQMT :::::::::: gi|993 EMLEAPHQMT 470 >>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [ (479 aa) initn: 3127 init1: 3127 opt: 3127 Z-score: 3112.2 bits: 585.3 E(): 1e-164 Smith-Waterman score: 3127; 99.784% identity (100.000% similar) in 463 aa overlap (28-490:17-479) 10 20 30 40 50 60 hj0717 RARAGRAGGRRARRPLPAPPAGHELVADMDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPS :.::::::::::::::::::::::::::::::: gi|400 MKNTIDNMEQKLISEEDLDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPS 10 20 30 40 70 80 90 100 110 120 hj0717 LHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|400 LHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSP 50 60 70 80 90 100 130 140 150 160 170 180 hj0717 QLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|400 QLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSC 110 120 130 140 150 160 190 200 210 220 230 240 hj0717 EGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|400 EGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG 170 180 190 200 210 220 250 260 270 280 290 300 hj0717 KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|400 KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAA 230 240 250 260 270 280 310 320 330 340 350 360 hj0717 DKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|400 DKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHV 290 300 310 320 330 340 370 380 390 400 410 420 hj0717 HRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|400 HRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEAL 350 360 370 380 390 400 430 440 450 460 470 480 hj0717 REKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|400 REKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 410 420 430 440 450 460 490 hj0717 EMLEAPHQMT :::::::::: gi|400 EMLEAPHQMT 470 >>gi|133701|sp|P19793.1|RXRA_HUMAN Retinoic acid recepto (462 aa) initn: 3123 init1: 3123 opt: 3123 Z-score: 3108.4 bits: 584.5 E(): 1.7e-164 Smith-Waterman score: 3123; 100.000% identity (100.000% similar) in 462 aa overlap (29-490:1-462) 10 20 30 40 50 60 hj0717 RARAGRAGGRRARRPLPAPPAGHELVADMDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPS :::::::::::::::::::::::::::::::: gi|133 MDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPS 10 20 30 70 80 90 100 110 120 hj0717 LHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 LHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSP 40 50 60 70 80 90 130 140 150 160 170 180 hj0717 QLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 QLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSC 100 110 120 130 140 150 190 200 210 220 230 240 hj0717 EGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 EGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG 160 170 180 190 200 210 250 260 270 280 290 300 hj0717 KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAA 220 230 240 250 260 270 310 320 330 340 350 360 hj0717 DKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 DKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHV 280 290 300 310 320 330 370 380 390 400 410 420 hj0717 HRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 HRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEAL 340 350 360 370 380 390 430 440 450 460 470 480 hj0717 REKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 REKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 400 410 420 430 440 450 490 hj0717 EMLEAPHQMT :::::::::: gi|133 EMLEAPHQMT 460 >>gi|84579197|dbj|BAE73032.1| hypothetical protein [Maca (462 aa) initn: 3106 init1: 3106 opt: 3106 Z-score: 3091.5 bits: 581.4 E(): 1.5e-163 Smith-Waterman score: 3106; 99.351% identity (99.567% similar) in 462 aa overlap (29-490:1-462) 10 20 30 40 50 60 hj0717 RARAGRAGGRRARRPLPAPPAGHELVADMDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPS :::::::::::::::::::::::::::::::: gi|845 MDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPS 10 20 30 70 80 90 100 110 120 hj0717 LHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|845 LHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSP 40 50 60 70 80 90 130 140 150 160 170 180 hj0717 QLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|845 QLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSC 100 110 120 130 140 150 190 200 210 220 230 240 hj0717 EGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|845 EGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG 160 170 180 190 200 210 250 260 270 280 290 300 hj0717 KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAA ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|845 KDRNENEVESTSGANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAA 220 230 240 250 260 270 310 320 330 340 350 360 hj0717 DKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHV ::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|845 DKQLFMLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHV 280 290 300 310 320 330 370 380 390 400 410 420 hj0717 HRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|845 HRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEAL 340 350 360 370 380 390 430 440 450 460 470 480 hj0717 REKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM ::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::: gi|845 REKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLTGDTPIDTFLM 400 410 420 430 440 450 490 hj0717 EMLEAPHQMT :::::::::: gi|845 EMLEAPHQMT 460 >>gi|110781215|emb|CAL25727.1| retinoid X receptor alpha (467 aa) initn: 3060 init1: 2863 opt: 3062 Z-score: 3047.7 bits: 573.3 E(): 4.1e-161 Smith-Waterman score: 3062; 97.430% identity (98.715% similar) in 467 aa overlap (29-490:1-467) 10 20 30 40 50 hj0717 RARAGRAGGRRARRPLPAPPAGHELVADMDTKHFLPLDFSTQVNSS-LTSPTGRGSMAAP :::::::::::::::::: :.::::::::::: gi|110 MDTKHFLPLDFSTQVNSSSLSSPTGRGSMAAP 10 20 30 60 70 80 90 100 110 hj0717 SLHPSLGPGIGSP----GQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGF :::::::::.::: ::::::::::::::::::::::::::::::::::::::::::: gi|110 SLHPSLGPGLGSPLGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGF 40 50 60 70 80 90 120 130 140 150 160 170 hj0717 STGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY .::::::.::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|110 GTGSPQLNSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMSSFTKHICAICGDRSSGKHY 100 110 120 130 140 150 180 190 200 210 220 230 hj0717 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|110 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE 160 170 180 190 200 210 240 250 260 270 280 290 hj0717 ERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTN ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|110 ERQRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTN 220 230 240 250 260 270 300 310 320 330 340 350 hj0717 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|110 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 280 290 300 310 320 330 360 370 380 390 400 410 hj0717 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|110 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 340 350 360 370 380 390 420 430 440 450 460 470 hj0717 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|110 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 400 410 420 430 440 450 480 490 hj0717 DTFLMEMLEAPHQMT ::::::::::::: : gi|110 DTFLMEMLEAPHQTT 460 >>gi|464702|sp|Q05343.1|RXRA_RAT Retinoic acid receptor (467 aa) initn: 3059 init1: 2862 opt: 3061 Z-score: 3046.7 bits: 573.1 E(): 4.6e-161 Smith-Waterman score: 3061; 97.430% identity (98.501% similar) in 467 aa overlap (29-490:1-467) 10 20 30 40 50 hj0717 RARAGRAGGRRARRPLPAPPAGHELVADMDTKHFLPLDFSTQVNSS-LTSPTGRGSMAAP :::::::::::::::::: :.::::::::::: gi|464 MDTKHFLPLDFSTQVNSSSLSSPTGRGSMAAP 10 20 30 60 70 80 90 100 110 hj0717 SLHPSLGPGIGSP----GQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGF :::::::::.::: ::::::::::::::::::::::::::::::::::::::::::: gi|464 SLHPSLGPGLGSPLGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGF 40 50 60 70 80 90 120 130 140 150 160 170 hj0717 STGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY ::::::.::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|464 ETGSPQLNSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMSSFTKHICAICGDRSSGKHY 100 110 120 130 140 150 180 190 200 210 220 230 hj0717 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|464 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE 160 170 180 190 200 210 240 250 260 270 280 290 hj0717 ERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTN ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|464 ERQRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTN 220 230 240 250 260 270 300 310 320 330 340 350 hj0717 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|464 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 280 290 300 310 320 330 360 370 380 390 400 410 hj0717 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|464 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 340 350 360 370 380 390 420 430 440 450 460 470 hj0717 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|464 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 400 410 420 430 440 450 480 490 hj0717 DTFLMEMLEAPHQMT ::::::::::::: : gi|464 DTFLMEMLEAPHQTT 460 >>gi|133702|sp|P28700.1|RXRA_MOUSE Retinoic acid recepto (467 aa) initn: 3078 init1: 2861 opt: 3059 Z-score: 3044.8 bits: 572.8 E(): 6e-161 Smith-Waterman score: 3059; 97.430% identity (98.715% similar) in 467 aa overlap (29-490:1-467) 10 20 30 40 50 hj0717 RARAGRAGGRRARRPLPAPPAGHELVADMDTKHFLPLDFSTQVNSS-LTSPTGRGSMAAP :::::::::::::::::: :.:::::::::.: gi|133 MDTKHFLPLDFSTQVNSSSLNSPTGRGSMAVP 10 20 30 60 70 80 90 100 110 hj0717 SLHPSLGPGIGSP----GQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGF ::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: gi|133 SLHPSLGPGIGSPLGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGF 40 50 60 70 80 90 120 130 140 150 160 170 hj0717 STGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY .::::::.::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|133 GTGSPQLNSPMNPVSSTEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY 100 110 120 130 140 150 180 190 200 210 220 230 hj0717 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE 160 170 180 190 200 210 240 250 260 270 280 290 hj0717 ERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTN ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|133 ERQRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTN 220 230 240 250 260 270 300 310 320 330 340 350 hj0717 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 280 290 300 310 320 330 360 370 380 390 400 410 hj0717 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 340 350 360 370 380 390 420 430 440 450 460 470 hj0717 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 400 410 420 430 440 450 480 490 hj0717 DTFLMEMLEAPHQMT ::::::::::::: : gi|133 DTFLMEMLEAPHQAT 460 >>gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha (452 aa) initn: 3051 init1: 3051 opt: 3051 Z-score: 3037.0 bits: 571.3 E(): 1.6e-160 Smith-Waterman score: 3051; 100.000% identity (100.000% similar) in 452 aa overlap (39-490:1-452) 10 20 30 40 50 60 hj0717 GRRARRPLPAPPAGHELVADMDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPG :::::::::::::::::::::::::::::: gi|830 FSTQVNSSLTSPTGRGSMAAPSLHPSLGPG 10 20 30 70 80 90 100 110 120 hj0717 IGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|830 IGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNP 40 50 60 70 80 90 130 140 150 160 170 180 hj0717 VSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|830 VSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFK 100 110 120 130 140 150 190 200 210 220 230 240 hj0717 RTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|830 RTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEV 160 170 180 190 200 210 250 260 270 280 290 300 hj0717 ESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|830 ESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLV 220 230 240 250 260 270 310 320 330 340 350 360 hj0717 EWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|830 EWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSA 280 290 300 310 320 330 370 380 390 400 410 420 hj0717 GVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|830 GVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASL 340 350 360 370 380 390 430 440 450 460 470 480 hj0717 EAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|830 EAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQ 400 410 420 430 440 450 490 hj0717 MT :: gi|830 MT >>gi|74194825|dbj|BAE26004.1| unnamed protein product [M (467 aa) initn: 3066 init1: 2849 opt: 3047 Z-score: 3032.8 bits: 570.6 E(): 2.8e-160 Smith-Waterman score: 3047; 97.216% identity (98.501% similar) in 467 aa overlap (29-490:1-467) 10 20 30 40 50 hj0717 RARAGRAGGRRARRPLPAPPAGHELVADMDTKHFLPLDFSTQVNSS-LTSPTGRGSMAAP :::::::::::::::::: :.:::::::::.: gi|741 MDTKHFLPLDFSTQVNSSSLNSPTGRGSMAVP 10 20 30 60 70 80 90 100 110 hj0717 SLHPSLGPGIGSP----GQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGF ::::::::::::: ::::::::::::::::::::::::::::::::::::::::: : gi|741 SLHPSLGPGIGSPLGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLVF 40 50 60 70 80 90 120 130 140 150 160 170 hj0717 STGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY .::::::.::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|741 GTGSPQLNSPMNPVSSTEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY 100 110 120 130 140 150 180 190 200 210 220 230 hj0717 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE 160 170 180 190 200 210 240 250 260 270 280 290 hj0717 ERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTN ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|741 ERQRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTN 220 230 240 250 260 270 300 310 320 330 340 350 hj0717 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 280 290 300 310 320 330 360 370 380 390 400 410 hj0717 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 340 350 360 370 380 390 420 430 440 450 460 470 hj0717 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 400 410 420 430 440 450 480 490 hj0717 DTFLMEMLEAPHQMT ::::::::::::: : gi|741 DTFLMEMLEAPHQAT 460 490 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Tue Aug 12 18:43:21 2008 done: Tue Aug 12 18:45:41 2008 Total Scan time: 869.540 Total Display time: 0.150 Function used was FASTA [version 34.26.5 April 26, 2007]