hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-18593725/chunk_1/iprscan-20080812-18593725.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj07540y2 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00063.11.fs Myosin head (motor domain) 798.1 4.7e-237 2 PF00063.11.ls Myosin head (motor domain) 783.4 1.2e-232 1 PF00620.17.fs RhoGAP domain 247.3 1.2e-72 1 PF00620.17.ls RhoGAP domain 249.2 8e-72 1 PF00612.17.ls IQ calmodulin-binding motif 106.1 9.5e-29 5 PF00612.17.fs IQ calmodulin-binding motif 99.0 1.6e-28 6 PF00788.13.fs Ras association (RalGDS/AF-6) domain 74.0 4.4e-19 1 PF00788.13.ls Ras association (RalGDS/AF-6) domain 62.8 1e-15 1 PF00130.12.fs Phorbol esters/diacylglycerol binding dom 36.2 2.5e-09 1 PF00130.12.ls Phorbol esters/diacylglycerol binding dom 38.2 2.7e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00788.13.ls 1/1 1 87 [. 1 97 [] 62.8 1e-15 PF00788.13.fs 1/1 3 87 .. 15 97 .] 74.0 4.4e-19 PF00063.11.ls 1/1 123 979 .. 1 791 [] 783.4 1.2e-232 PF00063.11.fs 1/2 123 665 .. 1 606 [. 676.9 1.4e-200 PF00063.11.fs 2/2 858 979 .. 651 791 .] 121.2 8.2e-36 PF00612.17.ls 1/5 995 1015 .. 1 21 [] 17.4 0.047 PF00612.17.ls 2/5 1018 1038 .. 1 21 [] 19.3 0.013 PF00612.17.fs 3/6 1050 1070 .. 1 21 [] 19.5 9.6e-05 PF00612.17.ls 3/5 1050 1070 .. 1 21 [] 21.5 0.0027 PF00612.17.ls 4/5 1091 1111 .. 1 21 [] 20.0 0.0077 PF00612.17.fs 6/6 1114 1134 .. 1 21 [] 25.9 1.2e-06 PF00612.17.ls 5/5 1114 1134 .. 1 21 [] 27.9 3.4e-05 PF00130.12.fs 1/1 1975 2026 .. 1 55 [] 36.2 2.5e-09 PF00130.12.ls 1/1 1975 2026 .. 1 55 [] 38.2 2.7e-08 PF00620.17.ls 1/1 2051 2202 .. 1 155 [] 249.2 8e-72 PF00620.17.fs 1/1 2051 2202 .. 1 155 [] 247.3 1.2e-72 Alignments of top-scoring domains: PF00788.13.ls: domain 1 of 1, from 1 to 87: score 62.8, E = 1e-15 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe ++g++ y+ i+++kn+Ta eVi+ l K++l d ++ hj07540y2 1 SEGTI-----------YCPIPARKNSTAAEVIESLINKLHL--DKTK 34 dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaq.......rsrF yvL E v+e ggee+ +L+++++P+q ++ ++r a +++ +++++rF hj07540y2 35 CYVLAE---VKEFGGEEW-ILNPTDCPVQRMMLWPRMALenrlsgeDYRF 80 lLrrred<-* lLr+++ hj07540y2 81 LLREKNL 87 PF00788.13.fs: domain 1 of 1, from 3 to 87: score 74.0, E = 4.4e-19 *->gt.yktilvskntTaeeViralLrKfgldaddpedyvLvEvslvler gt y+ i+++kn+Ta eVi+ l K++l d ++ yvL E v+e hj07540y2 3 GTiYCPIPARKNSTAAEVIESLINKLHL--DKTKCYVLAE---VKEF 44 ggeerrvLpddEkPlqiqlqlkrdaq.......rsrFlLrrred<-* ggee+ +L+++++P+q ++ ++r a +++ +++++rFlLr+++ hj07540y2 45 GGEEW-ILNPTDCPVQRMMLWPRMALenrlsgeDYRFLLREKNL 87 PF00063.11.ls: domain 1 of 1, from 123 to 979: score 783.4, E = 1.2e-232 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp +Dl+ L+ lnE ++L+NL+ R++ +IYTY+G +L+++NP+k Lp hj07540y2 123 FDDLCSLPDLNEKTLLENLRNRFK-HEKIYTYVGSILIVINPFKFLP 168 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA iY ++ +k+Y + + g+l+PHi+A+Ad AY +Ml++k+NQ+I+isGESG hj07540y2 169 IYNPKYVKMYDNHQLGKLEPHIYAVADVAYHAMLQRKKNQCIVISGESGS 218 GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA GKT +t ++ +l+++s ++ ++ +e+ il + P+LEA hj07540y2 219 GKTQSTNFLIHHLTALSQKGF-AS-----------GVEQIILGAGPVLEA 256 FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy FGNAKT NNNSSRFGKfi++++ +tG++ G+++e+YLLEKSR vy hj07540y2 257 FGNAKTAHNNNSSRFGKFIQVNYQETGTV----LGAYVEKYLLEKSRLVY 302 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc Q+ ERN+H+FY+LLagas+ e + +++L+ p+ Y+YLnq + hj07540y2 303 QEHNERNYHVFYYLLAGASEDE-RSAFHLK---QPEEYHYLNQIT----K 344 ytv.................DdgiDDaeeFkdtrkAlkiiGftdeeqrsi +++++ ++ +++++ + g D F+ ++ A+ +Gf ++ r+i hj07540y2 345 KPLrqswddycydsepdcftVEGEDLRHDFERLQLAMEMVGFLPKTRRQI 394 frilAAILhLGNieGFkqdqatTGneeqAGvtvsedteeileiiaeLLGv f++l+AILhLGNi k+ +++ + + ++e l i++eLL v hj07540y2 395 FSLLSAILHLGNIC-YKKKT---YRDD-S---IDICNPEVLPIVSELLEV 436 DaeeLekaLlsrriktGgggkRretvtkpqnveqAryaRDALAKaiYsRL +e L aL++r+ +t e+ p +A R+++AK +Ys+L hj07540y2 437 KEEMLFEALVTRKTVTV-----GEKLILPYKLAEAVTVRNSMAKSLYSAL 481 FdWiVekiNkaLsakeQasdSrGGqaaegdDTVSITVVdlPraaldktas FdWiV +iN aL + + + t hj07540y2 482 FDWIVFRINHALLNSK--------------------------DLEHNTKT 505 f.IGvLDIyGFEIFaekNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkr +IGvLDI+GFE e+NSFEQ+cIN++NE+LQ +FN+h+FklEQEEY + hj07540y2 506 LsIGVLDIFGFEDY-ENNSFEQFCINFANERLQHYFNQHIFKLEQEEYRT 554 EgIeWtfIdyglDnqacidLIEkKkPpGIlslLDEeCrfPkatDqtFldK EgI W +Idy +Dn ci+LI k kP G+l lLDEe++fP+at qt+ldK hj07540y2 555 EGISWHNIDY-IDNTCCINLISK-KPTGLLHLLDEESNFPQATNQTLLDK 602 LlqtfsskhprlthFAqkpgrfkkgksrqgkteFiikHYAGdVeYnaegf +++++++ + F ++ +FiikHYAG+V Y + +f hj07540y2 603 FKHQHEDNSY--IEF-PAV----------MEPAFIIKHYAGKVKYGVKDF 639 leKNkDpLfddlisllksSsdepllaeLFpeeel................ eKN D +d ++ll+sS++ ++++ + + + + hj07540y2 640 REKNTDHMRPDIVALLRSSKN-AFISGMIGIDPVavfrwailrafframv 688 .................................................. ++ ++++ +++++++++ + ++ ++ + +++ ++++ + ++ + hj07540y2 689 afreagkrnihrktghddtapcailksmdsfsflqhpvhqrsleilqrck 738 .................................................. +++ + ++++++++ ++ ++ + ++++++++ + +++++ ++++ ++ hj07540y2 739 eekysitrknprtplsdlqgmnalneknqhdtfdiawngrtgirqsrlss 788 .................................................s +++ ++++ ++++++ ++ ++ +++++ ++++ +++ + ++ hj07540y2 789 gtslldkdgifanstsskllerahgiltrnknfkskpalpkhllevnslK 838 eAaNltlkapdfeadfdeeeaaaksaklgsgkgksgkkknfleTvgsqfk +lt + + ++ kkk++ + ++qf hj07540y2 839 HLTRLT-----------------LQDRITKSLLHLHKKKKP-PSISAQFQ 870 eslgeLmktLsstAnlnPHfvRCIKPNekKkagqFDaslVlhQlrclGvL sl +Lm+tL + +P+fv CI+ N +K + F++ lVl Qlr+ G+L hj07540y2 871 ASLSKLMETLGQA---EPYFVKCIRSNAEKLPLRFSDVLVLRQLRYTGML 917 EigiRirraGFPnRitfdeFlqRYrlLapktwpsgfrpewvgdakkgcel E ++Rir+ G+++ + f++F++ + +L p+++ +k +++ hj07540y2 918 E-TVRIRQSGYSSKYSFQDFVSHFHVLLPRNI---------IPSKFNIQD 957 iLqslrqtpgnlDkeeyrfGkTKiFfR<-* + + nl+++ y++GkT +F++ hj07540y2 958 FFRKI-----NLNPDNYQVGKTMVFLK 979 PF00063.11.fs: domain 1 of 2, from 123 to 665: score 676.9, E = 1.4e-200 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp +Dl+ L+ lnE ++L+NL+ R++ +IYTY+G +L+++NP+k Lp hj07540y2 123 FDDLCSLPDLNEKTLLENLRNRFK-HEKIYTYVGSILIVINPFKFLP 168 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA iY ++ +k+Y + + g+l+PHi+A+Ad AY +Ml++k+NQ+I+isGESG hj07540y2 169 IYNPKYVKMYDNHQLGKLEPHIYAVADVAYHAMLQRKKNQCIVISGESGS 218 GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA GKT +t ++ +l+++s ++ ++ +e+ il + P+LEA hj07540y2 219 GKTQSTNFLIHHLTALSQKGF-AS-----------GVEQIILGAGPVLEA 256 FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy FGNAKT NNNSSRFGKfi++++ +tG++ G+++e+YLLEKSR vy hj07540y2 257 FGNAKTAHNNNSSRFGKFIQVNYQETGTV----LGAYVEKYLLEKSRLVY 302 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc Q+ ERN+H+FY+LLagas+ e + +++L+ p+ Y+YLnq + hj07540y2 303 QEHNERNYHVFYYLLAGASEDE-RSAFHLK---QPEEYHYLNQIT----K 344 ytv.................DdgiDDaeeFkdtrkAlkiiGftdeeqrsi +++++ ++ +++++ + g D F+ ++ A+ +Gf ++ r+i hj07540y2 345 KPLrqswddycydsepdcftVEGEDLRHDFERLQLAMEMVGFLPKTRRQI 394 frilAAILhLGNieGFkqdqatTGneeqAGvtvsedteeileiiaeLLGv f++l+AILhLGNi k+ +++ + + ++e l i++eLL v hj07540y2 395 FSLLSAILHLGNIC-YKKKT---YRDD-S---IDICNPEVLPIVSELLEV 436 DaeeLekaLlsrriktGgggkRretvtkpqnveqAryaRDALAKaiYsRL +e L aL++r+ +t e+ p +A R+++AK +Ys+L hj07540y2 437 KEEMLFEALVTRKTVTV-----GEKLILPYKLAEAVTVRNSMAKSLYSAL 481 FdWiVekiNkaLsakeQasdSrGGqaaegdDTVSITVVdlPraaldktas FdWiV +iN aL + d +++ hj07540y2 482 FDWIVFRINHALLNSK-----------------------------DLEHN 502 f....IGvLDIyGFEIFaekNSFEQLcINYvNEKLQQfFNhhmFklEQEE +++ +IGvLDI+GFE e+NSFEQ+cIN++NE+LQ +FN+h+FklEQEE hj07540y2 503 TktlsIGVLDIFGFEDY-ENNSFEQFCINFANERLQHYFNQHIFKLEQEE 551 YkrEgIeWtfIdyglDnqacidLIEkKkPpGIlslLDEeCrfPkatDqtF Y +EgI W +Idy +Dn ci+LI k kP G+l lLDEe++fP+at qt+ hj07540y2 552 YRTEGISWHNIDY-IDNTCCINLISK-KPTGLLHLLDEESNFPQATNQTL 599 ldKLlqtfsskhprlthFAqkpgrfkkgksrqgkteFiikHYAGdVeYna ldK +++++++ + F ++ +FiikHYAG+V Y + hj07540y2 600 LDKFKHQHEDNSY--IEF-PAV----------MEPAFIIKHYAGKVKYGV 636 egfleKNkDpLfddlisllksSsdepllae<-* +f eKN D +d ++ll+sS++ ++++ hj07540y2 637 KDFREKNTDHMRPDIVALLRSSKN-AFISG 665 PF00063.11.fs: domain 2 of 2, from 858 to 979: score 121.2, E = 8.2e-36 *->kkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNekKkag kkk++ + ++qf sl +Lm+tL + +P+fv CI+ N +K + hj07540y2 858 KKKKP-PSISAQFQASLSKLMETLGQA---EPYFVKCIRSNAEKLPL 900 qFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLapktwp F++ lVl Qlr+ G+LE ++Rir+ G+++ + f++F++ + +L p+++ hj07540y2 901 RFSDVLVLRQLRYTGMLE-TVRIRQSGYSSKYSFQDFVSHFHVLLPRNI- 948 sgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR<-* +k +++ + + nl+++ y++GkT +F++ hj07540y2 949 --------IPSKFNIQDFFRKI-----NLNPDNYQVGKTMVFLK 979 PF00612.17.ls: domain 1 of 5, from 995 to 1015: score 17.4, E = 0.047 *->rraaikIQaawRGylaRkryk<-* r +i++Q+++R l+R+++ hj07540y2 995 LRRIILLQRWFRVLLCRQHFL 1015 PF00612.17.ls: domain 2 of 5, from 1018 to 1038: score 19.3, E = 0.013 *->rraaikIQaawRGylaRkryk<-* r+a ++IQ++wR yl k+ + hj07540y2 1018 RQASVIIQRFWRNYLNQKQVR 1038 PF00612.17.fs: domain 3 of 6, from 1050 to 1070: score 19.5, E = 9.6e-05 *->rraaikIQaawRGylaRkryk<-* aa ++Qa wR++l R+ry hj07540y2 1050 ASAAALLQASWRAHLERQRYL 1070 PF00612.17.ls: domain 3 of 5, from 1050 to 1070: score 21.5, E = 0.0027 *->rraaikIQaawRGylaRkryk<-* aa ++Qa wR++l R+ry hj07540y2 1050 ASAAALLQASWRAHLERQRYL 1070 PF00612.17.ls: domain 4 of 5, from 1091 to 1111: score 20.0, E = 0.0077 *->rraaikIQaawRGylaRkryk<-* + aai+IQa+w++y+ kry+ hj07540y2 1091 HMAAICIQARWKAYRESKRYQ 1111 PF00612.17.fs: domain 6 of 6, from 1114 to 1134: score 25.9, E = 1.2e-06 *->rraaikIQaawRGylaRkryk<-* r+ +i++Q+ +RG++aR+r+k hj07540y2 1114 RKKIILLQSTCRGFRARQRFK 1134 PF00612.17.ls: domain 5 of 5, from 1114 to 1134: score 27.9, E = 3.4e-05 *->rraaikIQaawRGylaRkryk<-* r+ +i++Q+ +RG++aR+r+k hj07540y2 1114 RKKIILLQSTCRGFRARQRFK 1134 PF00130.12.fs: domain 1 of 1, from 1975 to 2026: score 36.2, E = 2.5e-09 *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek H F+++ ++ pt+C++C +++ ++ ++ C Ck+ +Hk+C+ k hj07540y2 1975 HIFKAT-QYSIPTYCEYCSSLI--WIMDRASVCKLCKYACHKKCCLK 2018 VppeCgcg<-* +++C + hj07540y2 2019 TTAKCSKK 2026 PF00130.12.ls: domain 1 of 1, from 1975 to 2026: score 38.2, E = 2.7e-08 *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek H F+++ ++ pt+C++C +++ ++ ++ C Ck+ +Hk+C+ k hj07540y2 1975 HIFKAT-QYSIPTYCEYCSSLI--WIMDRASVCKLCKYACHKKCCLK 2018 VppeCgcg<-* +++C + hj07540y2 2019 TTAKCSKK 2026 PF00620.17.ls: domain 1 of 1, from 2051 to 2202: score 249.2, E = 8e-72 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln Pl+vek+i+++e++GL tEGIyR+sGs+ +ikeLr+ +d++++ + hj07540y2 2051 PLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDAESV-- 2095 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea +l+++++hv+As++K++LR+LP+PL+tfelyeef++ a+ ++++ e ++ hj07540y2 2096 NLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLR-AMGLQERKETIRG 2144 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr ++ ++++L + + +tL++L+ hL+r+a +++ N+M+a++LAivF+P++lr hj07540y2 2145 VYSVIDQLSRTHLNTLERLIFHLVRIALQEDTNRMSANALAIVFAPCILR 2194 ppdgdsad<-* +pd++ ++ hj07540y2 2195 CPDTTDPL 2202 PF00620.17.fs: domain 1 of 1, from 2051 to 2202: score 247.3, E = 1.2e-72 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln Pl+vek+i+++e++GL tEGIyR+sGs+ +ikeLr+ +d++++ + hj07540y2 2051 PLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDAESV-- 2095 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea +l+++++hv+As++K++LR+LP+PL+tfelyeef++ a+ ++++ e ++ hj07540y2 2096 NLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLR-AMGLQERKETIRG 2144 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr ++ ++++L + + +tL++L+ hL+r+a +++ N+M+a++LAivF+P++lr hj07540y2 2145 VYSVIDQLSRTHLNTLERLIFHLVRIALQEDTNRMSANALAIVFAPCILR 2194 ppdgdsad<-* +pd++ ++ hj07540y2 2195 CPDTTDPL 2202 //