hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-18593725/chunk_1/iprscan-20080812-18593725.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj07540y2 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00242 1090.8 0 1 SM00324 259.9 2.1e-73 1 SM00015 95.4 6.6e-24 5 SM00314 83.8 2.1e-20 1 SM00109 46.5 3.6e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00314 1/1 1 87 [. 1 102 [] 83.8 2.1e-20 SM00242 1/1 115 992 .. 1 771 [] 1090.8 0 SM00015 1/5 993 1015 .. 1 23 [] 14.6 7.7 SM00015 2/5 1016 1038 .. 1 23 [] 15.4 6.2 SM00015 3/5 1048 1070 .. 1 23 [] 21.6 0.11 SM00015 4/5 1089 1111 .. 1 23 [] 15.3 6.5 SM00015 5/5 1112 1134 .. 1 23 [] 28.5 0.00093 SM00109 1/1 1975 2023 .. 1 61 [] 46.5 3.6e-09 SM00324 1/1 2048 2223 .. 1 193 [] 259.9 2.1e-73 Alignments of top-scoring domains: SM00314: domain 1 of 1, from 1 to 87: score 83.8, E = 2.1e-20 *->dtyvlrVyvddlsavdpgqtyktlrvskrtTardViqqllekfhltd + +g y+ + ++k++Ta++Vi+ l++k+hl++ hj07540y2 1 ----------S-----EGTIYCPIPARKNSTAAEVIESLINKLHLDK 32 edpeeYvLvevlpsggkErvLlddenPlqlqklwprda.ks.prqsslrF ++YvL ev++ gg+E++L+++++P+q ++lwpr+a +++++++++rF hj07540y2 33 --TKCYVLAEVKEFGGEEWILNPTDCPVQRMMLWPRMAlENrLSGEDYRF 80 vLrkrdd<-* +Lr+++ hj07540y2 81 LLREKNL 87 SM00242: domain 1 of 1, from 115 to 992: score 1090.8, E = 0 *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav p++++ +D++ L++LnE ++l+NL+ R++ +IYTY G++L+++ hj07540y2 115 LPQPQQKDFDDLCSLPDLNEKTLLENLRNRFKHEKIYTYVGSILIVI 161 NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre NP+k+l piY++ ++k+Y + ++g+l PH++A+AD AY++Ml++ hj07540y2 162 NPFKFL-PIYNPKYVKMYD------NHQLGKLEPHIYAVADVAYHAMLQR 204 keNQsIiISGESGAGKTEatKkimqYLAavsg..svesvedqiLesNPiL k+NQ+I+ISGESG+GKT +t +++ +L+a+s+++ +++ve+ iL + P+L hj07540y2 205 KKNQCIVISGESGSGKTQSTNFLIHHLTALSQkgFASGVEQIILGAGPVL 254 EAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQa EAFGNAKT +NnNSSRFGKfi++++ e+G++ GA +e YLLEKSR V+Q hj07540y2 255 EAFGNAKTAHNNNSSRFGKFIQVNYQETGTVLGAYVEKYLLEKSRLVYQE 304 kgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfan.k +ERNYH+FY+LLaGase++++ ++L++ pe+Y+YLnq +k hj07540y2 305 HNERNYHVFYYLLAGASEDERSAFHLKQ----PEEYHYLNQ------ItK 344 .r..............yssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfs ++ +++ ++ ++++ c+tv+g D ++F++ ++ Am+ +Gf hj07540y2 345 kPlrqswddycydsepD---CFTVEGEDLRHDFER----LQLAMEMVGFL 387 eeEqesIFrilAAILHLGNieFeegrntgdnaavtslkvadeeelqkaAe + ++IF++l+AILHLGNi ++++ + ++++ ++ ++e+l +++e hj07540y2 388 PKTRRQIFSLLSAILHLGNICYKKKT--YRDDSI---DICNPEVLPIVSE 432 LLgvdpeeLekaLtkRkiktggeggsvitkplnveqAvyaRDALAKaiYs LL+v++e L +aL++Rk++t ge + + p+++ +Av R+++AK +Ys hj07540y2 433 LLEVKEEMLFEALVTRKTVTVGE---KLILPYKLAEAVTVRNSMAKSLYS 479 RLFdWLVkrINksl..........sayfIGVLDIyGFEiFekNSFEQfCI LFdW+V rIN +l ++++ ++++++++IGVLDI+GFE e+NSFEQfCI hj07540y2 480 ALFDWIVFRINHALlnskdlehntKTLSIGVLDIFGFEDYENNSFEQFCI 529 NyaNEKLQQfFnqhvFKlEQEEYerEGIeWtfIdFfliDNQpciDLIEkK N+aNE+LQ +Fnqh+FKlEQEEY EGI+W +Id++ DN ci+LI kK hj07540y2 530 NFANERLQHYFNQHIFKLEQEEYRTEGISWHNIDYI--DNTCCINLISKK 577 gkrPlGIlslLDEeClfHAqPkgTDqtFleKLnkalyhqhhkkhphfskp P G+l lLDEe++f P++T qt+l+K +++h++++ ++ p hj07540y2 578 ---PTGLLHLLDEESNF---PQATNQTLLDKF-----KHQHEDNSYIEFP 616 rkSlkkgkpkkrfgrtaFiikHYAGdVtYnveGFLeKNkDtLfedlieLl +++aFiikHYAG+V Y v +F+eKN D ++d+++Ll hj07540y2 617 -----------AVMEPAFIIKHYAGKVKYGVKDFREKNTDHMRPDIVALL 655 qsSknpliasLFpeeadqsssaakekss.ggagksrkagrrepskg.... +sSkn +i + ++ + +++a + +++ r+ag +++ + hj07540y2 656 RSSKNAFISGMIGIDPVAVFRWAILRAFfRAMVAFREAG------Krnih 699 .................................................. ++++++++ + ++ ++ + +++ ++++ + ++ ++++ + +++++ hj07540y2 700 rktghddtapcailksmdsfsflqhpvhqrsleilqrckeekysitrknp 749 .................................................. +++ ++ ++ + ++++++++ + +++++ ++++ +++++ ++++ hj07540y2 750 rtplsdlqgmnalneknqhdtfdiawngrtgirqsrlssgtslldkdgif 799 .................................................. ++++++ ++ ++ +++++ ++++ +++ + ++ ++ ++ + +++ hj07540y2 800 anstsskllerahgiltrnknfkskpalpkhllevnslkhltrltlqdri 849 t....i.sskkrppTvGsqFk.sLneLmetLnstnPHFIRCIKPNeeKkp t++ + ++kk+pp++++qF+ sL++LmetL + +P+F+ CI++N eK+p hj07540y2 850 TksllHlHKKKKPPSISAQFQaSLSKLMETLGQAEPYFVKCIRSNAEKLP 899 gvFdaslVlhQLrylGvLEniRIRraGFPyRlpfdeFlqRYkvLlpktwp F + lVl+QLry G+LE++RIR+ G++++++f++F+ ++ vLlp ++ hj07540y2 900 LRFSDVLVLRQLRYTGMLETVRIRQSGYSSKYSFQDFVSHFHVLLPRNII 949 pwggewknrlfgdakkacealLqslglgiegdnldeeeyqiGkTKvFlRn p k + + + + + l+++ yq+GkT+vFl+ hj07540y2 950 P------------SKFNIQDFFRKIN-------LNPDNYQVGKTMVFLK- 979 pgqlaeLEelRee<-* + ++L +l + hj07540y2 980 EQERQHLQDLLHQ 992 SM00015: domain 1 of 5, from 993 to 1015: score 14.6, E = 7.7 *->rleraAiiIQaawRGylaRkryk<-* ++ r +i++Q+++R l+R+++ hj07540y2 993 EVLRRIILLQRWFRVLLCRQHFL 1015 SM00015: domain 2 of 5, from 1016 to 1038: score 15.4, E = 6.2 *->rleraAiiIQaawRGylaRkryk<-* l++a +iIQ++wR yl k+++ hj07540y2 1016 HLRQASVIIQRFWRNYLNQKQVR 1038 SM00015: domain 3 of 5, from 1048 to 1070: score 21.6, E = 0.11 *->rleraAiiIQaawRGylaRkryk<-* + +aA ++Qa wR +l R+ry hj07540y2 1048 VMASAAALLQASWRAHLERQRYL 1070 SM00015: domain 4 of 5, from 1089 to 1111: score 15.3, E = 6.5 *->rleraAiiIQaawRGylaRkryk<-* r++ aAi+IQa+w y+ kry+ hj07540y2 1089 RRHMAAICIQARWKAYRESKRYQ 1111 SM00015: domain 5 of 5, from 1112 to 1134: score 28.5, E = 0.00093 *->rleraAiiIQaawRGylaRkryk<-* ++++ +i++Q+++RG++aR+r+k hj07540y2 1112 EQRKKIILLQSTCRGFRARQRFK 1134 SM00109: domain 1 of 1, from 1975 to 2023: score 46.5, E = 3.6e-09 *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC H f+++ ++ pt+C++C ++iw +++ + C Ck++cHkkC hj07540y2 1975 HIFKATQYsIPTYCEYCSSLIWIMDR------ASVCKLCKYACHKKC 2015 aekvpaqshksglsC<-* + k +a C hj07540y2 2016 CLKTTA-------KC 2023 SM00324: domain 1 of 1, from 2048 to 2223: score 259.9, E = 2.1e-73 *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged. + +P++vek+i+y+e++Gl teGIYR+sGs+ ++keLr+ +d++ ++ hj07540y2 2048 RTVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDAEs 2094 dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie + +l++y++h++A+++K++LR+LP+PL+tfelyeef++ hj07540y2 2095 V-------------NLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLR 2131 aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL a+ l +++ e +r+++ ++ +L++ +++tL++L+ HL hj07540y2 2132 AMGL--------------QERKETIRGVYSVIDQLSRTHLNTLERLIfHL 2167 nrVaehsevNkMtarNLAivFgPtLlrpp........ltdikhqnkvvet r+a +++ N+M+a++LAivF+P++lr+p+++++ ++++di++ +++ve hj07540y2 2168 VRIALQEDTNRMSANALAIVFAPCILRCPdttdplqsVQDISKTTTCVEL 2217 lienad<-* ++++++ hj07540y2 2218 IVVEQM 2223 //