hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-19061974/chunk_1/iprscan-20080812-19061974.nocrc
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Query sequence: hj07570
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00017.14.fs SH2 domain                                     203.7    3.4e-69   2
PF00017.14.ls SH2 domain                                     207.5    2.9e-59   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00017.14.fs   1/2      92   167 ..     1    82 []    94.7  6.4e-32
PF00017.14.ls   1/2      92   167 ..     1    82 []    96.6    7e-26
PF00017.14.fs   2/2     385   459 ..     1    82 []   109.0    8e-37
PF00017.14.ls   2/2     385   459 ..     1    82 []   110.9  3.4e-30

Alignments of top-scoring domains:
PF00017.14.fs: domain 1 of 2, from 92 to 167: score 94.7, E = 6.4e-32
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSes.tpGdYtLSVrddgp
                      Wy+G+IsR+e+ + L+   ++dGtFLvR+ +++ +GdYtL++r +g 
     hj07570    92    WYWGDISREEVNDKLRD--MPDGTFLVRDASTkMQGDYTLTLRKGG- 135  

                   qgdrVkHyrIqsldnggyyitggvk.FssLpeLvehY<-*
                      ++k ++I   d++  y + ++ +F+s+ eL++hY   
     hj07570   136 ---NNKLIKIYHRDGK--YGFSDPLtFNSVVELINHY    167  

PF00017.14.ls: domain 1 of 2, from 92 to 167: score 96.6, E = 7e-26
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSes.tpGdYtLSVrddgp
                      Wy+G+IsR+e+ + L+   ++dGtFLvR+ +++ +GdYtL++r +g 
     hj07570    92    WYWGDISREEVNDKLRD--MPDGTFLVRDASTkMQGDYTLTLRKGG- 135  

                   qgdrVkHyrIqsldnggyyitggvk.FssLpeLvehY<-*
                      ++k ++I   d++  y + ++ +F+s+ eL++hY   
     hj07570   136 ---NNKLIKIYHRDGK--YGFSDPLtFNSVVELINHY    167  

PF00017.14.fs: domain 2 of 2, from 385 to 459: score 109.0, E = 8e-37
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgpq
                      W+  +I+R +AE+lL+   ++dG+FL+ReS+ ++G+Y++SV+ dg  
     hj07570   385    WFVEDINRVQAEDLLYG--KPDGAFLIRESS-KKGCYACSVVADG-- 426  

                   gdrVkHyrIqsldnggyyitggvk..FssLpeLvehY<-*
                     +VkH++I s+++g  y + ++++ +ssL eLv hY   
     hj07570   427 --EVKHCVIYSTARG--YGFAEPYnlYSSLKELVLHY    459  

PF00017.14.ls: domain 2 of 2, from 385 to 459: score 110.9, E = 3.4e-30
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgpq
                      W+  +I+R +AE+lL+   ++dG+FL+ReS+ ++G+Y++SV+ dg  
     hj07570   385    WFVEDINRVQAEDLLYG--KPDGAFLIRESS-KKGCYACSVVADG-- 426  

                   gdrVkHyrIqsldnggyyitggvk..FssLpeLvehY<-*
                     +VkH++I s+++g  y + ++++ +ssL eLv hY   
     hj07570   427 --EVKHCVIYSTARG--YGFAEPYnlYSSLKELVLHY    459  

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