hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-19061974/chunk_1/iprscan-20080812-19061974.nocrc
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Query sequence: hj07570
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00252                                                 222.1    4.8e-62   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00252    1/2      90   173 ..     1    87 []   113.6  2.2e-29
SM00252    2/2     383   465 ..     1    87 []   108.5  7.7e-28

Alignments of top-scoring domains:
SM00252: domain 1 of 2, from 90 to 173: score 113.6, E = 2.2e-29
                   *->epWYHGkisReeAEklLkneggpdGtFLvRdSes.spgdyvLSvrvk
                       +WY+G+isRee+ ++L+   +pdGtFLvRd ++++ gdy+L++r +
     hj07570    90    AEWYWGDISREEVNDKLRD--MPDGTFLVRDASTkMQGDYTLTLRKG 134  

                   gkvkHyrIrrtddgkfylggtprrkFpsL.eLvehYqknslg<-*
                   g +k ++I + d gk+ + +  + +F+s+ eL++hY++ sl    
     hj07570   135 GNNKLIKIYHRD-GKYGFSD--PLTFNSVvELINHYHHESLA    173  

SM00252: domain 2 of 2, from 383 to 465: score 108.5, E = 7.7e-28
                   *->epWYHGkisReeAEklLkneggpdGtFLvRdSesspgdyvLSvrvkg
                        W+  +i+R +AE+lL +  +pdG+FL+R+S++ +g+y+ Sv  +g
     hj07570   383    KTWFVEDINRVQAEDLLYG--KPDGAFLIRESSK-KGCYACSVVADG 426  

                   kvkHyrIrrtddgkfylggtprrkFpsL.eLvehYqknslg<-*
                   +vkH++I +t+ +++ +++ p   ++sL+eLv hYq++sl+   
     hj07570   427 EVKHCVIYSTA-RGYGFAE-PYNLYSSLkELVLHYQQTSLV    465  

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