hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-19180363/chunk_1/iprscan-20080812-19180363.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hj08005
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                        90.2    5.8e-24   5
PF00400.22.fs WD domain, G-beta repeat                        82.1    3.7e-22   4
PF02985.12.ls HEAT repeat                                     65.2    1.9e-16   5
PF02985.12.fs HEAT repeat                                     57.2      5e-15   5
PF00069.15.ls Protein kinase domain                          -10.5    5.7e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00069.15.ls   1/1      51   335 ..     1   287 []   -10.5  5.7e-08
PF02985.12.fs   1/5     437   473 ..     1    36 []    25.5  3.6e-06
PF02985.12.ls   1/5     437   473 ..     1    36 []    27.5  4.5e-05
PF02985.12.ls   2/5     482   518 ..     1    36 []    20.0   0.0078
PF00400.22.fs   1/4    1008  1046 ..     1    38 []    39.0  5.1e-10
PF00400.22.ls   1/5    1008  1046 ..     1    38 []    41.0  3.8e-09
PF00400.22.fs   3/4    1254  1294 ..     1    38 []    19.2  0.00019
PF00400.22.ls   5/5    1344  1383 .]     1    38 []    25.9  0.00014
PF00400.22.fs   4/4    1344  1383 .]     1    38 []    23.9  9.4e-06

Alignments of top-scoring domains:
PF00069.15.ls: domain 1 of 1, from 51 to 335: score -10.5, E = 5.7e-08
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkr.kekskkdktar
                      +e  + lGs  f +V +akh+    +V+vK++  ++ + +   +   
     hj08005    51    FEYDKSLGSTRFFKVARAKHREG--LVVVKVFAIQdPTLPLTSYKQE 95   

                   rlsEiqilkrLsHpNIvrlidvfed..kdhlylVlEycegGLrvldLfdy
                   +  E++i ++    N + +  + e  +++   l   y++       L+d+
     hj08005    96 LE-ELKIRLNS-AQNCLPFQKASEKasEKAAMLFRQYVRD-----NLYDR 138  

                   lsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldn
                   +s    +  l     e + ia Qil +++  H+ g+ H D+K eN+++ +
     hj08005   139 IS---TRPFL--NNIEKRWIAFQILTAVDQAHKSGVRHGDIKTENVMVTS 183  

                   ngvvdaflKiaDFGlAkkls.....t.sss.lttfvGTpw...YmAPEvl
                    + v     ++DF  A ++ +  ++ ++   ++ f  +++++ Y+APE  
     hj08005   184 WNWV----LLTDF--ASFKPtylpeDnPADfNYFFDTSRRrtcYIAPERF 227  

                   l...........................ggngygtkvDvWSlGvilyell
                    +++   ++ +  ++++++  + +++++++ +  ++ D++S+G++++el+
     hj08005   228 VdggmfateleymrdpstplvdlnsnqrTRGELKRAMDIFSAGCVIAELF 277  

                   tGkpPFsgevqdsldqlqlirkilgpplefdspewdsisrsefrrlpnls
                   t   P  +        + l +++++    f+++  + i +          
     hj08005   278 TEGVPLFDL------SQLLAYRNGH---FFPEQVLNKIED---------- 308  

                   eeakdLikkcLnkDPskRltaeeilqHPwf<-*
                    + ++L++ ++++ P kRl ae+ l+       
     hj08005   309 HSIRELVTQMIHREPDKRLEAEDYLKQ---    335  

PF02985.12.fs: domain 1 of 5, from 437 to 473: score 25.5, E = 3.6e-06
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      e +ld++ p+ll+  nD++p+VR+ A+++L++++  +   
     hj08005   437    EiLLDRITPYLLHFSNDSVPRVRAEALRTLTKVLALV    473  

PF02985.12.ls: domain 1 of 5, from 437 to 473: score 27.5, E = 4.5e-05
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      e +ld++ p+ll+  nD++p+VR+ A+++L++++  +   
     hj08005   437    EiLLDRITPYLLHFSNDSVPRVRAEALRTLTKVLALV    473  

PF02985.12.ls: domain 2 of 5, from 482 to 518: score 20.0, E = 0.0078
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      + + +++lp + +l +D+   VR+a ae ++ lae +   
     hj08005   482    NiYPEYILPGIAHLAQDDATIVRLAYAENIALLAETA    518  

PF00400.22.fs: domain 1 of 4, from 1008 to 1046: score 39.0, E = 5.1e-10
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g ++ +l+ H+s+V+ +++s +  +l+a++S Dgt+kiW+   
     hj08005  1008    GLLVaHLhEHKSAVNRIRVSDE-HSLFATCSNDGTVKIWN    1046 

PF00400.22.ls: domain 1 of 5, from 1008 to 1046: score 41.0, E = 3.8e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g ++ +l+ H+s+V+ +++s +  +l+a++S Dgt+kiW+   
     hj08005  1008    GLLVaHLhEHKSAVNRIRVSDE-HSLFATCSNDGTVKIWN    1046 

PF00400.22.fs: domain 3 of 4, from 1254 to 1294: score 19.2, E = 0.00019
                   *->geck.vl.gHtstVtcvafspd.sgpllasgSrDgtikiWd<-*
                        ++++l+   ++V  + +sp ++ p+l+++++D +i+ Wd   
     hj08005  1254    APPLsELqPSPHSVHGIYCSPAdGNPILLTAGSDMKIRFWD    1294 

PF00400.22.ls: domain 5 of 5, from 1344 to 1383: score 25.9, E = 0.00014
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      + + +   gH + +t+va  +  + +++++SrDg +k+W+   
     hj08005  1344    RGPEsLPvGHHDIITDVATFQTTQGFIVTASRDGIVKVWK    1383 

PF00400.22.fs: domain 4 of 4, from 1344 to 1383: score 23.9, E = 9.4e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      + + +   gH + +t+va  +  + +++++SrDg +k+W+   
     hj08005  1344    RGPEsLPvGHHDIITDVATFQTTQGFIVTASRDGIVKVWK    1383 

//