hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-19180363/chunk_1/iprscan-20080812-19180363.nocrc
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Query sequence: hj08005
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 111.0    1.4e-28   6
SM00220                                                  26.3    3.2e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00220    1/1      51   345 ..     1   231 []    26.3  3.2e-11
SM00320    1/6    1007  1046 ..     1    46 []    44.2  1.7e-08
SM00320    2/6    1056  1095 ..     1    46 []    10.5       11
SM00320    3/6    1157  1194 ..     1    46 []     8.7       21
SM00320    4/6    1196  1239 ..     1    46 []     1.5  2.9e+02
SM00320    5/6    1253  1294 ..     1    46 []    22.8    0.048
SM00320    6/6    1342  1383 .]     1    46 []    23.4    0.033

Alignments of top-scoring domains:
SM00220: domain 1 of 1, from 51 to 345: score 26.3, E = 3.2e-11
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik...........eri
                      +e  k lG+  F kV +a++++   lv +Kv   ++++ + ++ ++ 
     hj08005    51    FEYDKSLGSTRFFKVARAKHRE--GLVVVKVFAiqdptlpltsyKQE 95   

                   lrEikiLkk.dHPNIVkLydvfed..dklylVmEyceGdlGdLfdllkkr
                   l E+ki  ++    +   + +   +++   l+  y+     +L+d++  r
     hj08005    96 LEELKIRLNsAQNCLPFQKASEKAseKAAMLFRQYVRD---NLYDRISTR 142  

                   grrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..h
                   +       l+  e r ++ Qil a++  H+ g+ H D+K eN++++s + 
     hj08005   143 PF------LNNiEKRWIAFQILTAVDQAHKSGVRHGDIKTENVMVTSwnW 186  

                   vKlaDFGlArql....................ttfvGTpeYmAPEvl...
                   v l+DF  A + ++  +++++ + +   +++++  +    Y+APE + ++
     hj08005   187 VLLTDF--ASFKptylpednpadfnyffdtsrRRTC----YIAPERFvdg 230  

                   ............................gYgkpavDiWSlGcilyEllt.
                   +   ++ +  ++++++  + ++++++++   + a Di S Gc+++El+t+
     hj08005   231 gmfateleymrdpstplvdlnsnqrtrgELKR-AMDIFSAGCVIAELFTe 279  

                   GkpPFp.qldlifkkig...........SpeakdLikklLvkdPekRlta
                   G p+F+  + l +++    ++   ++ ++++ ++L+ ++ +++P+kRl a
     hj08005   280 GVPLFDlSQLLAYRNGHffpeqvlnkieDHSIRELVTQMIHREPDKRLEA 329  

                   .eaLedeldikaHPff<-*
                   ++ L+ ++  +  + f   
     hj08005   330 eDYLKQQRGNAFPEIF    345  

SM00320: domain 1 of 6, from 1007 to 1046: score 44.2, E = 1.7e-08
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ l++ l+ H++  +V+ +++s+ +      +l+a++s+Dgt+++W
     hj08005  1007    KgLLVAHLHEHKS--AVNRIRVSDEH------SLFATCSnDGTVKIW 1045 

                   d<-*
                   +   
     hj08005  1046 N    1046 

SM00320: domain 2 of 6, from 1056 to 1095: score 10.5, E = 11
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++ + t++   g  +V +++f++ +      ++la +s++g + l 
     hj08005  1056    TtRSILTYSRIGG--RVKTLTFCQGS------HYLAIASdNGAVQLL 1094 

                   d<-*
                       
     hj08005  1095 G    1095 

SM00320: domain 3 of 6, from 1157 to 1194: score 8.7, E = 21
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       ++l + lk  +g   +ts a++ +        +l+ g + gt  +W
     hj08005  1157    AwTLKHDLK--SG--LITSFAVDIHQ------CWLCIGTsSGTMACW 1193 

                   d<-*
                   d   
     hj08005  1194 D    1194 

SM00320: domain 4 of 6, from 1196 to 1239: score 1.5, E = 2.9e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        +l  + ++H + ++++ ++ +p      ++ ++a+  +++ + +W
     hj08005  1196    RfQLPISSHCHPSRARIRRLSMHPLY----QSWVIAAVQgNNEVSMW 1238 

                   d<-*
                   d   
     hj08005  1239 D    1239 

SM00320: domain 5 of 6, from 1253 to 1294: score 22.8, E = 0.048
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +  +l++l+   +  +V+++  sp +    ++ +l+++++D +ir+W
     hj08005  1253    SaPPLSELQPSPH--SVHGIYCSPAD----GNPILLTAGsDMKIRFW 1293 

                   d<-*
                   d   
     hj08005  1294 D    1294 

SM00320: domain 6 of 6, from 1342 to 1383: score 23.4, E = 0.033
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      +++   +l+ gH +   +t+va  ++        +++++s+Dg +++
     hj08005  1342    PrRGPESLPvGHHD--IITDVATFQTT-----QGFIVTASrDGIVKV 1381 

                   Wd<-*
                   W+   
     hj08005  1382 WK    1383 

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