hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-17244115/chunk_1/iprscan-20090525-17244115.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj08012 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 453.8 2e-133 1 PF07714.7.fs Protein tyrosine kinase 451.9 7.4e-133 1 PF00757.10.fs Furin-like cysteine rich region 328.6 9.9e-96 4 PF00757.10.ls Furin-like cysteine rich region 323.4 3.6e-94 1 PF01030.14.ls Receptor L domain 268.2 1.5e-77 2 PF01030.14.fs Receptor L domain 264.6 8.4e-77 2 PF00069.15.fs Protein kinase domain 140.8 7e-40 1 PF00069.15.ls Protein kinase domain 142.7 9.4e-40 1 PF02757.7.ls YLP motif 11.3 1.1 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01030.14.fs 1/2 150 271 .. 1 145 [] 153.1 2.7e-44 PF01030.14.ls 1/2 150 271 .. 1 145 [] 154.9 2e-43 PF00757.10.ls 1/1 287 441 .. 1 179 [] 323.4 3.6e-94 PF00757.10.fs 1/4 287 441 .. 1 179 [] 321.5 1.3e-93 PF01030.14.ls 2/2 464 584 .. 1 145 [] 113.3 6.4e-31 PF01030.14.fs 2/2 464 584 .. 1 145 [] 111.5 3.7e-32 PF00069.15.fs 1/1 818 1074 .. 1 287 [] 140.8 7e-40 PF07714.7.fs 1/1 818 1074 .. 1 272 [] 451.9 7.4e-133 PF07714.7.ls 1/1 818 1074 .. 1 272 [] 453.8 2e-133 PF00069.15.ls 1/1 818 1074 .. 1 287 [] 142.7 9.4e-40 PF02757.7.ls 1/2 1118 1126 .. 1 9 [] 7.2 9.4 PF02757.7.ls 2/2 1291 1299 .. 1 9 [] 4.1 49 Alignments of top-scoring domains: PF01030.14.fs: domain 1 of 2, from 150 to 271: score 153.1, E = 2.7e-44 *->nCtvIeGnLeItlrsengdkkwfsniedeleldseledlssLsniee +C+v+ GnLe+t+ +n +ls+L+ i+e hj08012 150 GCQVVQGNLELTYLPTN-------------------ASLSFLQDIQE 177 itGyLlIyrtpgnlvslsFLpNLrvIrGrnlfddsntdnyalvildNpnl + Gy+lI+++ v +L++Lr++rG++lf+d nyal++ldN + hj08012 178 VQGYVLIAHN---QVRQVPLQRLRIVRGTQLFED----NYALAVLDNGDP 220 nkss........sGLeeLglpsLkeItskgGgvyihnNpHPkLCytetei +++++ ++ +++GL+eL+l+sL+eI+ Ggv i++Np +LCy +t i hj08012 221 LNNTtpvtgaspGGLRELQLRSLTEILK--GGVLIQRNP--QLCYQDT-I 265 dwflit<-* +w++i+ hj08012 266 LWKDIF 271 PF01030.14.ls: domain 1 of 2, from 150 to 271: score 154.9, E = 2e-43 *->nCtvIeGnLeItlrsengdkkwfsniedeleldseledlssLsniee +C+v+ GnLe+t+ +n +ls+L+ i+e hj08012 150 GCQVVQGNLELTYLPTN-------------------ASLSFLQDIQE 177 itGyLlIyrtpgnlvslsFLpNLrvIrGrnlfddsntdnyalvildNpnl + Gy+lI+++ v +L++Lr++rG++lf+d nyal++ldN + hj08012 178 VQGYVLIAHN---QVRQVPLQRLRIVRGTQLFED----NYALAVLDNGDP 220 nkss........sGLeeLglpsLkeItskgGgvyihnNpHPkLCytetei +++++ ++ +++GL+eL+l+sL+eI+ Ggv i++Np +LCy +t i hj08012 221 LNNTtpvtgaspGGLRELQLRSLTEILK--GGVLIQRNP--QLCYQDT-I 265 dwflit<-* +w++i+ hj08012 266 LWKDIF 271 PF00757.10.ls: domain 1 of 1, from 287 to 441: score 323.4, E = 3.6e-94 *->greCpkvChGTleakGesCkkttiNGefdyRCWGsgpedCQklTKlv +r+C++ C ++Ck ++ RCWG+++edCQ lT++v hj08012 287 SRACHP-CS-------PMCK-GS-------RCWGESSEDCQSLTRTV 317 CpsqCsgGrrCtgpnptdCCHeeCaGGCTGHGPkdPtDClACRhFyddGi C+ +C+ rC+gp+ptdCCHe+Ca+GCT GPk+ +DClAC+hF+++Gi hj08012 318 CAGGCA---RCKGPLPTDCCHEQCAAGCT--GPKH-SDCLACLHFNHSGI 361 CketCPpptyynedTrqvdfNPegkYqfGasCVkeCPsnylvthnGsCvr C+ +CP++++yn+dT+++++NPeg+Y+fGasCV++CP+nyl+t++GsC++ hj08012 362 CELHCPALVTYNTDTFESMPNPEGRYTFGASCVTACPYNYLSTDVGSCTL 411 sCPsgHktevgAesGvreCekCReGpCPKvCe<-* +CP + ++ev+Ae+G+++CekC ++pC++vC+ hj08012 412 VCPLH-NQEVTAEDGTQRCEKC-SKPCARVCY 441 PF00757.10.fs: domain 1 of 4, from 287 to 441: score 321.5, E = 1.3e-93 *->greCpkvChGTleakGesCkkttiNGefdyRCWGsgpedCQklTKlv +r+C++ C ++Ck ++ RCWG+++edCQ lT++v hj08012 287 SRACHP-CS-------PMCK-GS-------RCWGESSEDCQSLTRTV 317 CpsqCsgGrrCtgpnptdCCHeeCaGGCTGHGPkdPtDClACRhFyddGi C+ +C+ rC+gp+ptdCCHe+Ca+GCT GPk+ +DClAC+hF+++Gi hj08012 318 CAGGCA---RCKGPLPTDCCHEQCAAGCT--GPKH-SDCLACLHFNHSGI 361 CketCPpptyynedTrqvdfNPegkYqfGasCVkeCPsnylvthnGsCvr C+ +CP++++yn+dT+++++NPeg+Y+fGasCV++CP+nyl+t++GsC++ hj08012 362 CELHCPALVTYNTDTFESMPNPEGRYTFGASCVTACPYNYLSTDVGSCTL 411 sCPsgHktevgAesGvreCekCReGpCPKvCe<-* +CP + ++ev+Ae+G+++CekC ++pC++vC+ hj08012 412 VCPLH-NQEVTAEDGTQRCEKC-SKPCARVCY 441 PF01030.14.ls: domain 2 of 2, from 464 to 584: score 113.3, E = 6.4e-31 *->nCtvIeGnLeItlrsengdkkwfsniedeleldseledlssLsniee +C +I+G+L ++++s+ gd+ sn++++ ++ l +++++ee hj08012 464 GCKKIFGSLAFLPESFDGDP--ASNTAPLQPE-----QLQVFETLEE 503 itGyLlIyrtpgnlvslsFLpNLrvIrGrnlfddsntdnyalvildNpnl itGyL+I +p +l +ls+++NL+vIrGr l+++ y+l hj08012 504 ITGYLYISAWPDSLPDLSVFQNLQVIRGRILHNG----AYSLTLQGLG-- 547 nksssGLeeLglpsLkeItskgGgvyihnNpHPkLCyteteidwflit<- ++ Lgl+sL+e+ s G ih+N LC+++t + w++++ hj08012 548 ------ISWLGLRSLRELGS--GLALIHHNT--HLCFVHT-VPWDQLF 584 * hj08012 - - PF01030.14.fs: domain 2 of 2, from 464 to 584: score 111.5, E = 3.7e-32 *->nCtvIeGnLeItlrsengdkkwfsniedeleldseledlssLsniee +C +I+G+L ++++s+ gd+ sn++++ ++ l +++++ee hj08012 464 GCKKIFGSLAFLPESFDGDP--ASNTAPLQPE-----QLQVFETLEE 503 itGyLlIyrtpgnlvslsFLpNLrvIrGrnlfddsntdnyalvildNpnl itGyL+I +p +l +ls+++NL+vIrGr l+++ y+l hj08012 504 ITGYLYISAWPDSLPDLSVFQNLQVIRGRILHNG----AYSLTLQGLG-- 547 nksssGLeeLglpsLkeItskgGgvyihnNpHPkLCyteteidwflit<- ++ Lgl+sL+e+ s G ih+N LC+++t + w++++ hj08012 548 ------ISWLGLRSLRELGS--GLALIHHNT--HLCFVHT-VPWDQLF 584 * hj08012 - - PF00069.15.fs: domain 1 of 1, from 818 to 1074: score 140.8, E = 7e-40 *->yelleklGsGsfGtVykakhkgtgk....iVAvKiikkr.kekskkd ++++++lGsG+fGtVyk++++ +g++ + VA+K+++ ++ k +k+ hj08012 818 LRKVKVLGSGAFGTVYKGIWIPDGEnvkiPVAIKVLRENtSPKANKE 864 ktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLf + + E+++++ +++p++ rl++++ + + lV+ +++ G L hj08012 865 ILD----EAYVMAGVGSPYVSRLLGICL-TSTVQLVTQLMPYG----CLL 905 dylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILl d+++ +++g+l +++ +++ Qi++g+ YL + + +HRDL N+L+ hj08012 906 DHVR--ENRGRL--GSQDLLNWCMQIAKGMSYLEDVRLVHRDLAARNVLV 951 dnngvvdaflKiaDFGlAkkls.t.sss.lttfvGTpwYmAPEvllggng ++ ++v Ki+DFGlA++l+ + ++++ + + +mA E +l ++ hj08012 952 KSPNHV----KITDFGLARLLDiDeTEYhADGGKVPIKWMALESIL-RRR 996 ygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkilgpplef ++ +DvWS+Gv+++el+t G P++g + + l++k + hj08012 997 FTHQSDVWSYGVTVWELMTfGAKPYDGI---PaREIPDLLEKGER----L 1039 dspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf + p ++ + ++ kc+ D ++R+ ++e++ f hj08012 1040 PQPPICT-------------IDVYMIMVKCWMIDSECRPRFRELVSE--F 1074 <-* hj08012 - - PF07714.7.fs: domain 1 of 1, from 818 to 1074: score 451.9, E = 7.4e-133 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie l++ k+LG+GaFG+VykG++ ++g++ +i+VA+K+L+e ++s+++ hj08012 818 LRKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRE-NTSPKA-- 861 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL ++ l EA +M p + rLlG+c+ + +Vt +m++G+L hj08012 862 NKEILDEAYVMAGV-GSPYVSRLLGICL--TST----VQLVTQLMPYGCL 904 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ld+ r++ +++L +dLl++++QiAkGM+YLe+ ++vHRDLAARN+LV+ hj08012 905 LDHVREN--RGRLGSQDLLNWCMQIAKGMSYLEDVRLVHRDLAARNVLVK 952 enlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygkFtskS ++++VKI+DFGLaR+++ d++ + +ggk+P+kWmA+Es+ ++Ft++S hj08012 953 SPNHVKITDFGLARLLDIDETE-YHADGGKVPIKWMALESILRRRFTHQS 1001 DVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPdel DVWS+GV+ WE++t+G++P Y g++ e+ +ll e+G+RLp+P+ C+ ++ hj08012 1002 DVWSYGVTVWELMTFGAKP-YDGIPAREIPDLL-EKGERLPQPPICTIDV 1049 YdlMlqCWaedPedRPtFselveeL<-* Y++M +CW+ d e RP+F+elv+e+ hj08012 1050 YMIMVKCWMIDSECRPRFRELVSEF 1074 PF07714.7.ls: domain 1 of 1, from 818 to 1074: score 453.8, E = 2e-133 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie l++ k+LG+GaFG+VykG++ ++g++ +i+VA+K+L+e ++s+++ hj08012 818 LRKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRE-NTSPKA-- 861 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL ++ l EA +M p + rLlG+c+ + +Vt +m++G+L hj08012 862 NKEILDEAYVMAGV-GSPYVSRLLGICL--TST----VQLVTQLMPYGCL 904 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ld+ r++ +++L +dLl++++QiAkGM+YLe+ ++vHRDLAARN+LV+ hj08012 905 LDHVREN--RGRLGSQDLLNWCMQIAKGMSYLEDVRLVHRDLAARNVLVK 952 enlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygkFtskS ++++VKI+DFGLaR+++ d++ + +ggk+P+kWmA+Es+ ++Ft++S hj08012 953 SPNHVKITDFGLARLLDIDETE-YHADGGKVPIKWMALESILRRRFTHQS 1001 DVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPdel DVWS+GV+ WE++t+G++P Y g++ e+ +ll e+G+RLp+P+ C+ ++ hj08012 1002 DVWSYGVTVWELMTFGAKP-YDGIPAREIPDLL-EKGERLPQPPICTIDV 1049 YdlMlqCWaedPedRPtFselveeL<-* Y++M +CW+ d e RP+F+elv+e+ hj08012 1050 YMIMVKCWMIDSECRPRFRELVSEF 1074 PF00069.15.ls: domain 1 of 1, from 818 to 1074: score 142.7, E = 9.4e-40 *->yelleklGsGsfGtVykakhkgtgk....iVAvKiikkr.kekskkd ++++++lGsG+fGtVyk++++ +g++ + VA+K+++ ++ k +k+ hj08012 818 LRKVKVLGSGAFGTVYKGIWIPDGEnvkiPVAIKVLRENtSPKANKE 864 ktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLf + + E+++++ +++p++ rl++++ + + lV+ +++ G L hj08012 865 ILD----EAYVMAGVGSPYVSRLLGICL-TSTVQLVTQLMPYG----CLL 905 dylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILl d+++ +++g+l +++ +++ Qi++g+ YL + + +HRDL N+L+ hj08012 906 DHVR--ENRGRL--GSQDLLNWCMQIAKGMSYLEDVRLVHRDLAARNVLV 951 dnngvvdaflKiaDFGlAkkls.t.sss.lttfvGTpwYmAPEvllggng ++ ++v Ki+DFGlA++l+ + ++++ + + +mA E +l ++ hj08012 952 KSPNHV----KITDFGLARLLDiDeTEYhADGGKVPIKWMALESIL-RRR 996 ygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkilgpplef ++ +DvWS+Gv+++el+t G P++g + + l++k + hj08012 997 FTHQSDVWSYGVTVWELMTfGAKPYDGI---PaREIPDLLEKGER----L 1039 dspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf + p ++ + ++ kc+ D ++R+ ++e++ f hj08012 1040 PQPPICT-------------IDVYMIMVKCWMIDSECRPRFRELVSE--F 1074 <-* hj08012 - - PF02757.7.ls: domain 1 of 2, from 1118 to 1126: score 7.2, E = 9.4 *->sneYLpPve<-* ++eYL P++ hj08012 1118 AEEYLVPQQ 1126 PF02757.7.ls: domain 2 of 2, from 1291 to 1299: score 4.1, E = 49 *->sneYLpPve<-* + eYL P+ hj08012 1291 NPEYLTPQG 1299 //