hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-17244115/chunk_1/iprscan-20090525-17244115.nocrc
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Query sequence: hj08012
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 434.8   4.6e-126   1
SM00220                                                 150.8    1.4e-40   1
SM00261                                                 111.7    8.3e-29   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00261    1/3     330   373 ..     1    48 []    37.4    2e-06
SM00261    2/3     599   650 ..     1    48 []    38.9  6.8e-07
SM00261    3/3     655   704 ..     1    48 []    35.4  7.5e-06
SM00219    1/1     818  1074 ..     1   280 []   434.8 4.6e-126
SM00220    1/1     818  1075 ..     1   231 []   150.8  1.4e-40

Alignments of top-scoring domains:
SM00261: domain 1 of 3, from 330 to 373: score 37.4, E = 2e-06
                   *->dgvCkpChpsCatGCtGpgadqCtsCkhgyyldgngtCvseCp.pgt
                       + C  Ch++Ca GCtGp+  +C++C h+++    g+C   Cp   t
     hj08012   330    PTDC--CHEQCAAGCTGPKHSDCLACLHFNHS---GICELHCPaLVT 371  

                   ya<-*
                   y    
     hj08012   372 YN    373  

SM00261: domain 2 of 3, from 599 to 650: score 38.9, E = 6.8e-07
                   *->dgvC....kpChpsCat.GCtGpgadqCtsCkhgyyldgngtCvseC
                      +++C +++ +Ch  Ca ++C+Gpg++qC+ C+ ++ +++   Cv+eC
     hj08012   599    EDECvgegLACHQLCARgHCWGPGPTQCVNCSQFLRGQE---CVEEC 642  

                   p..pgtya<-*
                      +g  +   
     hj08012   643 RvlQGLPR    650  

SM00261: domain 3 of 3, from 655 to 704: score 35.4, E = 7.5e-06
                   *->dgvCkpChpsCat.....GCtGpgadqCtsCkhgyyldgngtCvseC
                      +++C pChp+C  ++++ +C Gp adqC++C+h+++ +    Cv+ C
     hj08012   655    ARHCLPCHPECQPqngsvTCFGPEADQCVACAHYKDPPF---CVARC 698  

                   ppgtya<-*
                   p+g  +   
     hj08012   699 PSGVKP    704  

SM00219: domain 1 of 1, from 818 to 1074: score 434.8, E = 4.6e-126
                   *->ltlgkkLGeGaFGeVykGtlk.......ieVAVKtLkeda....kee
                      l++ k+LG+GaFG+VykG++++++++ +i+VA+K+L+e+++++  +e
     hj08012   818    LRKVKVLGSGAFGTVYKGIWIpdgenvkIPVAIKVLRENTspkaNKE 864  

                   FlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdL
                   +l+Ea +M  +    p + +LlG+c++          + +v+ +m++G+L
     hj08012   865 ILDEAYVMAGV--GSPYVSRLLGICLT--------STVQLVTQLMPYGCL 904  

                   ldyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgen
                   ld+ r+nr++l  +dLl+++ QIAkGM+YLe+ ++vHRDLAARN+Lv+++
     hj08012   905 LDHVRENRGRLGSQDLLNWCMQIAKGMSYLEDVRLVHRDLAARNVLVKSP 954  

                   kvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslk
                   ++vKI+DFGL+R l+ d      +  Y++    ggk  +Pi+WmA+Es+ 
     hj08012   955 NHVKITDFGLARLLDID------ETEYHAD---GGK--VPIKWMALESIL 993  

                   dgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyR
                    ++Ft++SDVWS+GV+ WE++t+G++PY g     ++++e+  +l+kG+R
     hj08012   994 RRRFTHQSDVWSYGVTVWELMTFGAKPYDG-----IPAREIPDLLEKGER 1038 

                   lpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                   lp+P+         C+ ++Y++M +CW+ d e+RP+F+elv+++   
     hj08012  1039 LPQPPI--------CTIDVYMIMVKCWMIDSECRPRFRELVSEF    1074 

SM00220: domain 1 of 1, from 818 to 1075: score 150.8, E = 1.4e-40
                   *->YellkklGkGaFGkVylardkk....tgrlvAiKvik........er
                       +++k+lG+GaFG+Vy+++++ ++++ +  vAiKv++++++++ ++ 
     hj08012   818    LRKVKVLGSGAFGTVYKGIWIPdgenVKIPVAIKVLRentspkanKE 864  

                   ilrEikiLkk.dHPNIVkLydvfeddklylVmEyceGdlGdLfdllkkrg
                   il E  ++   + P++ +L++++ ++ + lV+ +++   G L+d+ ++++
     hj08012   865 ILDEAYVMAGvGSPYVSRLLGICLTSTVQLVTQLMPY--GCLLDHVRENR 912  

                   rrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hv
                   +r     l  ++   ++ Qi++++ YL + + +HRDL   N+L+ s++hv
     hj08012   913 GR-----LGSqDLLNWCMQIAKGMSYLEDVRLVHRDLAARNVLVKSpnHV 957  

                   KlaDFGlArql.........ttfvGTpeYmAPEvl...gYgkpavDiWSl
                   K++DFGlAr+l+ ++++ + +   +   +mA E + ++ +++  +D+WS 
     hj08012   958 KITDFGLARLLdideteyhaDGGKVPIKWMALESIlrrRFTH-QSDVWSY 1006 

                   GcilyEllt.GkpPFp.....qldlifkkig........SpeakdLikkl
                   G++++El+t G  P+++ + +++  +++k  + + ++  + ++  ++ k+
     hj08012  1007 GVTVWELMTfGAKPYDgiparEIPDLLEKGErlpqppicTIDVYMIMVKC 1056 

                   LvkdPekRlta.eaLedeldikaHPff<-*
                   +  d e R+  +e+          +f    
     hj08012  1057 WMIDSECRPRFrELVS--------EFS    1075 

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