hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-19240981/chunk_1/iprscan-20080812-19240981.nocrc
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Query sequence: hj08120
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 308.2    5.6e-88   1
SM00219                                                 -11.8    2.1e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      44   293 ..     1   280 []   -11.8  2.1e-10
SM00220    1/1      44   339 ..     1   231 []   308.2  5.6e-88

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 44 to 293: score -11.8, E = 2.1e-10
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.....keeFlr
                       + +k +G+Ga G+V+ +     +++VA+K+L    +++++ +  +r
     hj08120    44    YQNLKPIGSGAQGIVCAAYDAvldRNVAIKKLSRPFqnqthAKRAYR 90   

                   EakiMkklGgkHpNiVkLlGvcteegrr..FmevePlmivmEymegGdLl
                   E+ +Mk +  +H+Ni+ Ll v t ++  ++F   + +++vmE+m+  +L 
     hj08120    91 ELVLMKCV--NHKNIISLLNVFTPQKTLeeF---QDVYLVMELMDA-NLC 134  

                   dyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk
                   + +   +  l ++ + +  +Q  +G  +L+s +++HRDL   N+ v+++ 
     hj08120   135 QVI-QME--LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDC 181  

                   vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkd
                   + KI DFGL+R  +            ++     + +++     APE++  
     hj08120   182 TLKILDFGLARTAGTS---------FMM-----TPYVVTRYYRAPEVILG 217  

                   gkFtskSDVWSFGVlLWEift....lGeqPYpgeiqqfmsneevleylkk
                     + +  D+WS G  + E+  ++  + +  Y +       +  v+e+l +
     hj08120   218 MGYKENVDIWSVGCIMGEMVRhkilFPGRDYID------QWNKVIEQLGT 261  

                   GyRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel..verl<
                                    CP+ + +l  +  ++  e+RP  + l+  +++ 
     hj08120   262 P----------------CPEFMKKLQPTVRNY-VENRPKYAGLtfPKLF  293  

                   -*
                     
     hj08120     -    -    

SM00220: domain 1 of 1, from 44 to 339: score 308.2, E = 5.6e-88
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr
                      Y+ lk++G+Ga G V+ a+d   +r vAiK+++++ +++++ +r++r
     hj08120    44    YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSrpfqnqthaKRAYR 90   

                   EikiLkk.dHPNIVkLydvfed.......dklylVmEyceGdlGdLfdll
                   E+ ++k  +H+NI+ L+ vf  +++ ++ +++ylVmE+++    +L +++
     hj08120    91 ELVLMKCvNHKNIISLLNVFTPqktleefQDVYLVMELMDA---NLCQVI 137  

                   kkrgrrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds
                   +          l+ ++  ++++Q+l+++++LHs gIiHRDLKP+Ni + s
     hj08120   138 QME--------LDHeRMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKS 179  

                   ..hvKlaDFGlArql......ttfvGTpeYmAPEvl...gYgkpavDiWS
                   + ++K+ DFGlAr  +++   t +v+T++Y+APEv+ + gY    vDiWS
     hj08120   180 dcTLKILDFGLARTAgtsfmmTPYVVTRYYRAPEVIlgmGYKE-NVDIWS 228  

                   lGcilyElltGkpPFp......qldlifkkig..................
                   +Gci+ E++  k +Fp+++  +q +++++++g++ ++  ++  ++ +++ 
     hj08120   229 VGCIMGEMVRHKILFPgrdyidQWNKVIEQLGtpcpefmkklqptvrnyv 278  

                   ..............................SpeakdLikklLvkdPekRl
                   ++++++ + + ++  +++  + ++++++ + ++a+dL++k+Lv dP+kR+
     hj08120   279 enrpkyagltfpklfpdslfpadsehnklkASQARDLLSKMLVIDPAKRI 328  

                   ta.eaLedeldikaHPff<-*
                   ++++aL+       HP++   
     hj08120   329 SVdDALQ-------HPYI    339  

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