hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-16572222/chunk_1/iprscan-20090416-16572222.nocrc
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Query sequence: hj08251
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00153.17.ls Mitochondrial carrier protein                 311.4    1.6e-90   3
PF00153.17.fs Mitochondrial carrier protein                 305.5    8.5e-90   3

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00153.17.fs   1/3      61   169 ..     1   100 []   120.7  3.8e-35
PF00153.17.ls   1/3      61   169 ..     1   100 []   122.7  9.6e-34
PF00153.17.fs   2/3     173   264 ..     1   100 []   103.8  3.9e-30
PF00153.17.ls   2/3     173   264 ..     1   100 []   105.7  1.3e-28
PF00153.17.fs   3/3     281   367 .]     1   100 []    81.1    2e-23
PF00153.17.ls   3/3     281   367 .]     1   100 []    83.0  8.9e-22

Alignments of top-scoring domains:
PF00153.17.fs: domain 1 of 3, from 61 to 169: score 120.7, E = 3.8e-35
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQ.........stavada
                       +l++l+aGg++G+++a++t+Pl+vvKtRLQ+++ +   ++ +++ +
     hj08251    61    DTLVHLFAGGCGGTVGAILTCPLEVVKTRLQsssvtlyisEVQLNTM 107  

                   ssaaggsrkYkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgt
                    +a++ +    g+l+c+k i+ +EG+r+L++Gl+pnl++vaP++aiyF++
     hj08251   108 AGASVNRVVSPGPLHCLKVILEKEGPRSLFRGLGPNLVGVAPSRAIYFAA 157  

                   YEtlKklllkkk<-*
                   Y  +K+ l + +   
     hj08251   158 YSNCKEKLNDVF    169  

PF00153.17.ls: domain 1 of 3, from 61 to 169: score 122.7, E = 9.6e-34
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQ.........stavada
                       +l++l+aGg++G+++a++t+Pl+vvKtRLQ+++ +   ++ +++ +
     hj08251    61    DTLVHLFAGGCGGTVGAILTCPLEVVKTRLQsssvtlyisEVQLNTM 107  

                   ssaaggsrkYkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgt
                    +a++ +    g+l+c+k i+ +EG+r+L++Gl+pnl++vaP++aiyF++
     hj08251   108 AGASVNRVVSPGPLHCLKVILEKEGPRSLFRGLGPNLVGVAPSRAIYFAA 157  

                   YEtlKklllkkk<-*
                   Y  +K+ l + +   
     hj08251   158 YSNCKEKLNDVF    169  

PF00153.17.fs: domain 2 of 3, from 173 to 264: score 103.8, E = 3.9e-30
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk
                      s+ ++++++++AG++a t+t+P++++KtRLQ       + a++ + +
     hj08251   173    STQVHMISAAMAGFTAITATNPIWLIKTRLQ-------LDARNRGER 212  

                   YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll
                     g+++c++k+y+++G++g+Y+G++++ ++ + ++ i F++YE++K+ ll
     hj08251   213 RMGAFECVRKVYQTDGLKGFYRGMSASYAG-ISETVIHFVIYESIKQKLL 261  

                   kkk<-*
                   ++k   
     hj08251   262 EYK    264  

PF00153.17.ls: domain 2 of 3, from 173 to 264: score 105.7, E = 1.3e-28
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk
                      s+ ++++++++AG++a t+t+P++++KtRLQ       + a++ + +
     hj08251   173    STQVHMISAAMAGFTAITATNPIWLIKTRLQ-------LDARNRGER 212  

                   YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll
                     g+++c++k+y+++G++g+Y+G++++ ++ + ++ i F++YE++K+ ll
     hj08251   213 RMGAFECVRKVYQTDGLKGFYRGMSASYAG-ISETVIHFVIYESIKQKLL 261  

                   kkk<-*
                   ++k   
     hj08251   262 EYK    264  

PF00153.17.fs: domain 3 of 3, from 281 to 367: score 81.1, E = 2e-23
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk
                       f+  +la++++ ++a+t+ yP +vv+tRL              ++k
     hj08251   281    DFVGMMLAAATSKTCATTIAYPHEVVRTRLR-----------EEGTK 316  

                   YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll
                   Y++++++++ +++eEG ++LY+Gl++ l+r++P++ai+++tYE +  ++l
     hj08251   317 YRSFFQTLSLLVQEEGYGSLYRGLTTHLVRQIPNTAIMMATYELV--VYL 364  

                   kkk<-*
                    ++   
     hj08251   365 LNG    367  

PF00153.17.ls: domain 3 of 3, from 281 to 367: score 83.0, E = 8.9e-22
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk
                       f+  +la++++ ++a+t+ yP +vv+tRL              ++k
     hj08251   281    DFVGMMLAAATSKTCATTIAYPHEVVRTRLR-----------EEGTK 316  

                   YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll
                   Y++++++++ +++eEG ++LY+Gl++ l+r++P++ai+++tYE +  ++l
     hj08251   317 YRSFFQTLSLLVQEEGYGSLYRGLTTHLVRQIPNTAIMMATYELV--VYL 364  

                   kkk<-*
                    ++   
     hj08251   365 LNG    367  

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