hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-19360589/chunk_1/iprscan-20080812-19360589.nocrc
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Query sequence: hk00170
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.fs Zinc finger, C2H2 type                          63.2    7.6e-16   3
PF00096.16.ls Zinc finger, C2H2 type                          55.4    1.8e-13   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   1/3      44    66 ..     1    24 []    26.3  2.6e-05
PF00096.16.ls   1/2      44    66 ..     1    24 []    28.3  2.5e-05
PF00096.16.fs   2/3      72    94 ..     1    24 []    25.1  5.3e-05
PF00096.16.ls   2/2      72    94 ..     1    24 []    27.1  5.9e-05

Alignments of top-scoring domains:
PF00096.16.fs: domain 1 of 3, from 44 to 66: score 26.3, E = 2.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+  Cgk+F++ ++L+rH+ +H   
     hk00170    44    HACE-MCGKAFRDVYHLNRHKLSH    66   

PF00096.16.ls: domain 1 of 2, from 44 to 66: score 28.3, E = 2.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+  Cgk+F++ ++L+rH+ +H   
     hk00170    44    HACE-MCGKAFRDVYHLNRHKLSH    66   

PF00096.16.fs: domain 2 of 3, from 72 to 94: score 25.1, E = 5.3e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+Cp +C+++F+rk+ +  H r+H   
     hk00170    72    YQCP-VCQQRFKRKDRMSYHVRSH    94   

PF00096.16.ls: domain 2 of 2, from 72 to 94: score 27.1, E = 5.9e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+Cp +C+++F+rk+ +  H r+H   
     hk00170    72    YQCP-VCQQRFKRKDRMSYHVRSH    94   

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