hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-19360589/chunk_1/iprscan-20080812-19360589.nocrc
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Query sequence: hk00170
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  54.5    1.3e-11   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/2      44    66 ..     1    23 []    25.4    0.008
SM00355      2/2      72    94 ..     1    23 []    29.2  0.00058

Alignments of top-scoring domains:
SM00355: domain 1 of 2, from 44 to 66: score 25.4, E = 0.008
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cgk f++  +L+rH  +H   
     hk00170    44    HACEM-CGKAFRDVyHLNRHKLSH    66   

SM00355: domain 2 of 2, from 72 to 94: score 29.2, E = 0.00058
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+Cp+ C+++f++k+ +  H+r+H   
     hk00170    72    YQCPV-CQQRFKRKdRMSYHVRSH    94   

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