hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-19475196/chunk_1/iprscan-20080812-19475196.nocrc
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Query sequence: hk00208
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00572                                                 570.4   6.8e-167   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00572    1/1      97   351 ..     1   263 []   570.4 6.8e-167

Alignments of top-scoring domains:
SM00572: domain 1 of 1, from 97 to 351: score 570.4, E = 6.8e-167
                   *->tLkGVmRVGslaKGlllkGDrdaeLVllCkekPTseLlariarklpe
                      tL+GVmRVG++aKGlllkGD d+eLVllCkekPT++Ll+++a++l++
     hk00208    97    TLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKPTTALLDKVADNLAI 143  

                   qlkavtedkYeVeqnv.EaaiiikstkeptmevgitltSplareelliat
                   ql+avtedkYe+ q+v++aai+ik+tkep+++++i+ltSp++ree+++ +
     hk00208   144 QLAAVTEDKYEILQSVdDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVL 193  

                   vpenlrkldPpdvLDrkkclsaLAslRHakWFqarAsgLqPafiqscviv
                   ++e+l+++dPpdvLDr+kcl+aLAslRHakWFqarA+gL+     scviv
     hk00208   194 AGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLK-----SCVIV 238  

                   IRiLRDLcnRvPtwqpLsaWaLELLvekaIsNnsarqplglGdAlRRvlE
                   IR+LRDLc+RvPtw+pL++W+LELL+ek+I+  +a++p+g+G+AlRRvlE
     hk00208   239 IRVLRDLCTRVPTWGPLRGWPLELLCEKSIG--TANRPMGAGEALRRVLE 286  

                   cLAsGilLpgspGLlDPCEkdntdvltalTlqQredvTasAQtlLRllAF
                   cLAsGi++p+++G++DPCEk++td++ +l++qQred+T+sAQ++LRl+AF
     hk00208   287 CLASGIVMPDGSGIYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAF 336  

                   gnDQihkvLGmdplpsk<-*
                   g  Q+hkvLGmdplpsk   
     hk00208   337 G--QLHKVLGMDPLPSK    351  

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