hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-19531964/chunk_1/iprscan-20080812-19531964.nocrc
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Query sequence: hk00282
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00536.20.fs SAM domain (Sterile alpha motif)                58.2    1.7e-16   1
PF00536.20.ls SAM domain (Sterile alpha motif)                60.2    6.5e-15   1
PF07647.7.fs SAM domain (Sterile alpha motif)                48.8    1.2e-13   1
PF07647.7.ls SAM domain (Sterile alpha motif)                50.7    4.4e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07647.7.fs   1/1    1032  1099 .]     1    72 []    48.8  1.2e-13
PF07647.7.ls   1/1    1032  1099 .]     1    72 []    50.7  4.4e-12
PF00536.20.fs   1/1    1033  1097 ..     1    65 []    58.2  1.7e-16
PF00536.20.ls   1/1    1033  1097 ..     1    65 []    60.2  6.5e-15

Alignments of top-scoring domains:
PF07647.7.fs: domain 1 of 1, from 1032 to 1099: score 48.8, E = 1.2e-13
                   *->veswslesvaeWLesi.glegqYkdnFsdqgitglellllrlteedL
                      ++ ws+e+v e+  s++g+ ++ ++ F++q+i+g ++l l l+ee+L
     hk00282  1032    PSRWSVEEVYEFIASLqGC-QEIAEEFRSQEIDG-QAL-LLLKEEHL 1075 

                   aklalGitsvghRkkilkkiqelkqq<-*
                    ++a++i ++g+ +ki  ki+ lk+    
     hk00282  1076 -MSAMNI-KLGPALKICAKINVLKET    1099 

PF07647.7.ls: domain 1 of 1, from 1032 to 1099: score 50.7, E = 4.4e-12
                   *->veswslesvaeWLesi.glegqYkdnFsdqgitglellllrlteedL
                      ++ ws+e+v e+  s++g+ ++ ++ F++q+i+g ++l l l+ee+L
     hk00282  1032    PSRWSVEEVYEFIASLqGC-QEIAEEFRSQEIDG-QAL-LLLKEEHL 1075 

                   aklalGitsvghRkkilkkiqelkqq<-*
                    ++a++i ++g+ +ki  ki+ lk+    
     hk00282  1076 -MSAMNI-KLGPALKICAKINVLKET    1099 

PF00536.20.fs: domain 1 of 1, from 1033 to 1097: score 58.2, E = 1.7e-16
                   *->dgwsfesVgeWLesi.glgqYidnFlsagyidgdtllqlteeDLed.
                      + ws+e+V e++ s++g+++ +++F ++++idg++ll+l+ee L++ 
     hk00282  1033    SRWSVEEVYEFIASLqGCQEIAEEF-RSQEIDGQALLLLKEEHLMSa 1078 

                   lGvtllGHrkKIlssIqgLk<-*
                   ++++l G+++KI+  I  Lk   
     hk00282  1079 MNIKL-GPALKICAKINVLK    1097 

PF00536.20.ls: domain 1 of 1, from 1033 to 1097: score 60.2, E = 6.5e-15
                   *->dgwsfesVgeWLesi.glgqYidnFlsagyidgdtllqlteeDLed.
                      + ws+e+V e++ s++g+++ +++F ++++idg++ll+l+ee L++ 
     hk00282  1033    SRWSVEEVYEFIASLqGCQEIAEEF-RSQEIDGQALLLLKEEHLMSa 1078 

                   lGvtllGHrkKIlssIqgLk<-*
                   ++++l G+++KI+  I  Lk   
     hk00282  1079 MNIKL-GPALKICAKINVLK    1097 

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