hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-20045890/chunk_1/iprscan-20080812-20045890.nocrc
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Query sequence: hk00321
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00009.17.fs Elongation factor Tu GTP binding domain     278.9    9.3e-81   1
PF00009.17.ls Elongation factor Tu GTP binding domain     243.4    4.5e-70   1
PF03144.15.ls Elongation factor Tu domain 2                92.1    1.5e-24   1
PF03144.15.fs Elongation factor Tu domain 2                90.3    5.4e-24   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00009.17.ls   1/1      15   215 ..     1   299 []   243.4  4.5e-70
PF00009.17.fs   1/1      24   215 ..    44   299 .]   278.9  9.3e-81
PF03144.15.fs   1/1     236   303 ..     1    75 []    90.3  5.4e-24
PF03144.15.ls   1/1     236   303 ..     1    75 []    92.1  1.5e-24

Alignments of top-scoring domains:
PF00009.17.ls: domain 1 of 1, from 15 to 215: score 243.4, E = 4.5e-70
                   *->krhrNigiiGHVDHGKTTLtdrLlyytgaisertleklegeakegge
                                           +L  + +               ++g 
     hk00321    15    ---------------------ALSRDPHP-------------LQMG- 26   

                   rkgsfklaaviDkmeeEreRGITIksahvsfewkdededgeteakpgkkr
                    kgsfk+a+v+Dk+++EreRGITI+++ ++fe                  
     hk00321    27 -KGSFKYAWVLDKLKAERERGITIDISLWKFE------------------ 57   

                   gnetTekrhiniIDTPGHvDFtkevirGlaqaDGAiLVVdAveGvmp.Gf
                       T k+ i+iID+PGH+DF+k++i+G++qaD+A+L+V+A  G+++ G+
     hk00321    58 ----TTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEaGI 103  

                   .k.GQTrehlrlArqlgvppiilvVaiNKmDrvgaelklpdvpeelyeel
                   +k+GQTreh++lA +lgv+  +l+V +NKmD +        ++e++y+e+
     hk00321   104 sKnGQTREHALLAYTLGVK--QLIVGVNKMDSTEPA-----YSEKRYDEI 146  

                   eeevrellkpIgedfgvidlilaevaeddelmeyylegdeipiipiSall
                   ++ev+++ k+                       +++++  +p++piS+++
     hk00321   147 VKEVSAYIKK-----------------------IGYNPATVPFVPISGWH 173  

                   gdnidelsiknkLkkddlslvPwykgiSalknkgrdrgaiptLLeaiddy
                   gdn++e s++          +Pw+kg+ +  ++g+ +g    LLea+d+ 
     hk00321   174 GDNMLEPSPN----------MPWFKGWKVERKEGNASG--VSLLEALDT- 210  

                   lPsPe<-*
                   + +P+   
     hk00321   211 ILPPT    215  

PF00009.17.fs: domain 1 of 1, from 24 to 215: score 278.9, E = 9.3e-81
                   *->eggerkgsfklaaviDkmeeEreRGITIksahvsfewkdededgete
                      ++g  kgsfk+a+v+Dk+++EreRGITI+++ ++fe           
     hk00321    24    QMG--KGSFKYAWVLDKLKAERERGITIDISLWKFE----------- 57   

                   akpgkkrgnetTekrhiniIDTPGHvDFtkevirGlaqaDGAiLVVdAve
                              T k+ i+iID+PGH+DF+k++i+G++qaD+A+L+V+A  
     hk00321    58 -----------TTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 96   

                   Gvmp.Gf.k.GQTrehlrlArqlgvppiilvVaiNKmDrvgaelklpdvp
                   G+++ G++k+GQTreh++lA +lgv+  +l+V +NKmD +        ++
     hk00321    97 GEFEaGIsKnGQTREHALLAYTLGVK--QLIVGVNKMDSTEPA-----YS 139  

                   eelyeeleeevrellkpIgedfgvidlilaevaeddelmeyylegdeipi
                   e++y+e+++ev+++ k+                       +++++  +p+
     hk00321   140 EKRYDEIVKEVSAYIKK-----------------------IGYNPATVPF 166  

                   ipiSallgdnidelsiknkLkkddlslvPwykgiSalknkgrdrgaiptL
                   +piS+++gdn++e s++          +Pw+kg+ +  ++g+ +g    L
     hk00321   167 VPISGWHGDNMLEPSPN----------MPWFKGWKVERKEGNASG--VSL 204  

                   LeaiddylPsPe<-*
                   Lea+d+ + +P+   
     hk00321   205 LEALDT-ILPPT    215  

PF03144.15.fs: domain 1 of 1, from 236 to 303: score 90.3, E = 5.4e-24
                   *->GtVatgRvesGtlkkGdeveigg.ngtkkyvpevtrVtslemfhg.l
                      GtV++gRve+G+l++G+ v +++ n       ++t+V+s+em+h+ l
     hk00321   236    GTVPVGRVETGILRPGMVVTFAPvN-------ITTEVKSVEMHHEaL 275  

                   deavaGdnaGlilagiglkdaaikrGdvla<-*
                    ea +Gdn+G++++++ +kd  i+rG v++   
     hk00321   276 SEALPGDNVGFNVKNVSVKD--IRRGNVCG    303  

PF03144.15.ls: domain 1 of 1, from 236 to 303: score 92.1, E = 1.5e-24
                   *->GtVatgRvesGtlkkGdeveigg.ngtkkyvpevtrVtslemfhg.l
                      GtV++gRve+G+l++G+ v +++ n       ++t+V+s+em+h+ l
     hk00321   236    GTVPVGRVETGILRPGMVVTFAPvN-------ITTEVKSVEMHHEaL 275  

                   deavaGdnaGlilagiglkdaaikrGdvla<-*
                    ea +Gdn+G++++++ +kd  i+rG v++   
     hk00321   276 SEALPGDNVGFNVKNVSVKD--IRRGNVCG    303  

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