hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-17310896/chunk_1/iprscan-20090525-17310896.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk00353 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 705.0 5e-209 22 PF00096.16.fs Zinc finger, C2H2 type 661.7 5.4e-196 22 PF02023.7.ls SCAN domain 232.8 6.9e-67 1 PF02023.7.fs SCAN domain 230.8 2.7e-66 1 PF01096.9.fs Transcription factor S-II (TFIIS) 125.8 2.8e-38 20 PF01286.9.fs XPA protein N-terminal 93.9 5e-26 16 PF01352.17.fs KRAB box 86.1 8e-24 1 PF01352.17.ls KRAB box 88.1 2.5e-23 1 PF07754.2.fs Domain of unknown function (DUF1610) 41.3 4.6e-10 14 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 32.1 1.4e-09 11 PF02892.5.fs BED zinc finger 33.7 3e-09 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02023.7.ls 1/1 56 151 .. 1 96 [] 232.8 6.9e-67 PF02023.7.fs 1/1 56 151 .. 1 96 [] 230.8 2.7e-66 PF01352.17.ls 1/1 237 277 .. 1 41 [] 88.1 2.5e-23 PF01352.17.fs 1/1 237 277 .. 1 41 [] 86.1 8e-24 PF00096.16.ls 2/22 418 440 .. 1 24 [] 31.5 2.8e-06 PF00096.16.fs 2/22 418 440 .. 1 24 [] 29.5 4.2e-06 PF00096.16.fs 3/22 446 468 .. 1 24 [] 35.2 1.6e-07 PF00096.16.ls 3/22 446 468 .. 1 24 [] 37.1 5.5e-08 PF00096.16.ls 4/22 474 496 .. 1 24 [] 32.4 1.4e-06 PF00096.16.fs 4/22 474 496 .. 1 24 [] 30.4 2.4e-06 PF00096.16.fs 5/22 502 524 .. 1 24 [] 33.6 4.1e-07 PF00096.16.ls 5/22 502 524 .. 1 24 [] 35.5 1.7e-07 PF00096.16.ls 6/22 530 552 .. 1 24 [] 28.6 2.1e-05 PF00096.16.fs 6/22 530 552 .. 1 24 [] 26.6 2.2e-05 PF00096.16.ls 7/22 558 580 .. 1 24 [] 32.9 1e-06 PF00096.16.fs 7/22 558 580 .. 1 24 [] 30.9 1.9e-06 PF00096.16.ls 8/22 586 608 .. 1 24 [] 34.1 4.4e-07 PF00096.16.fs 8/22 586 608 .. 1 24 [] 32.2 9.2e-07 PF00096.16.fs 9/22 614 636 .. 1 24 [] 28.2 9e-06 PF00096.16.ls 9/22 614 636 .. 1 24 [] 30.1 7e-06 PF00096.16.ls 10/22 642 664 .. 1 24 [] 34.4 3.8e-07 PF00096.16.fs 10/22 642 664 .. 1 24 [] 32.4 8e-07 PF00096.16.ls 11/22 670 692 .. 1 24 [] 29.9 8.1e-06 PF00096.16.fs 11/22 670 692 .. 1 24 [] 28.0 1e-05 PF00096.16.fs 12/22 698 720 .. 1 24 [] 29.7 3.7e-06 PF00096.16.ls 12/22 698 720 .. 1 24 [] 31.7 2.4e-06 PF00096.16.ls 13/22 726 748 .. 1 24 [] 27.3 5e-05 PF00096.16.fs 13/22 726 748 .. 1 24 [] 25.3 4.6e-05 PF00096.16.ls 14/22 754 776 .. 1 24 [] 36.7 7.2e-08 PF00096.16.fs 14/22 754 776 .. 1 24 [] 34.8 2e-07 PF00096.16.ls 15/22 782 804 .. 1 24 [] 33.4 7.1e-07 PF00096.16.fs 15/22 782 804 .. 1 24 [] 31.5 1.4e-06 PF00096.16.ls 16/22 810 832 .. 1 24 [] 30.1 7.2e-06 PF00096.16.fs 16/22 810 832 .. 1 24 [] 28.1 9.3e-06 PF00096.16.fs 17/22 838 860 .. 1 24 [] 38.6 2e-08 PF00096.16.ls 17/22 838 860 .. 1 24 [] 40.6 5.1e-09 PF00096.16.ls 18/22 866 888 .. 1 24 [] 33.2 8.4e-07 PF00096.16.fs 18/22 866 888 .. 1 24 [] 31.2 1.6e-06 PF00096.16.ls 19/22 894 916 .. 1 24 [] 28.2 2.6e-05 PF00096.16.fs 19/22 894 916 .. 1 24 [] 26.3 2.7e-05 PF00096.16.ls 20/22 922 944 .. 1 24 [] 35.7 1.5e-07 PF00096.16.fs 20/22 922 944 .. 1 24 [] 33.8 3.7e-07 PF00096.16.fs 21/22 950 972 .. 1 24 [] 30.3 2.7e-06 PF00096.16.ls 21/22 950 972 .. 1 24 [] 32.2 1.6e-06 PF00096.16.fs 22/22 978 1000 .. 1 24 [] 30.1 3.1e-06 PF00096.16.ls 22/22 978 1000 .. 1 24 [] 32.0 1.9e-06 Alignments of top-scoring domains: PF02023.7.ls: domain 1 of 1, from 56 to 151: score 232.8, E = 6.9e-67 *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL + +E+++++FRq+rY+etsGP+EALsrLReLC++WLrPE++TK+QIL hk00353 56 SVWETSHLHFRQLRYHETSGPQEALSRLRELCRRWLRPEARTKAQIL 102 ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV< ELLVLEQFL+ILP+E+++wVq hhP+SgEEaV+L+E+L+++lD+p+ qV hk00353 103 ELLVLEQFLSILPGEIRTWVQLHHPGSGEEAVALVEELQKDLDGPAIQV 151 -* hk00353 - - PF02023.7.fs: domain 1 of 1, from 56 to 151: score 230.8, E = 2.7e-66 *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL + +E+++++FRq+rY+etsGP+EALsrLReLC++WLrPE++TK+QIL hk00353 56 SVWETSHLHFRQLRYHETSGPQEALSRLRELCRRWLRPEARTKAQIL 102 ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV< ELLVLEQFL+ILP+E+++wVq hhP+SgEEaV+L+E+L+++lD+p+ qV hk00353 103 ELLVLEQFLSILPGEIRTWVQLHHPGSGEEAVALVEELQKDLDGPAIQV 151 -* hk00353 - - PF01352.17.ls: domain 1 of 1, from 237 to 277: score 88.1, E = 2.5e-23 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+Fe V V+Ft EEW++L+p Qr+LY+dVMlENy+n++Sl+ hk00353 237 VMFEEVSVCFTSEEWACLGPIQRALYWDVMLENYGNVTSLE 277 PF01352.17.fs: domain 1 of 1, from 237 to 277: score 86.1, E = 8e-24 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+Fe V V+Ft EEW++L+p Qr+LY+dVMlENy+n++Sl+ hk00353 237 VMFEEVSVCFTSEEWACLGPIQRALYWDVMLENYGNVTSLE 277 PF00096.16.ls: domain 2 of 22, from 418 to 440: score 31.5, E = 2.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F ++s+L +Hlr H hk00353 418 HKCK-ECGKGFIQRSSLLMHLRNH 440 PF00096.16.fs: domain 2 of 22, from 418 to 440: score 29.5, E = 4.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F ++s+L +Hlr H hk00353 418 HKCK-ECGKGFIQRSSLLMHLRNH 440 PF00096.16.fs: domain 3 of 22, from 446 to 468: score 35.2, E = 1.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+++ L +H+r+H hk00353 446 YKCN-ECGKAFSQSAYLLNHQRIH 468 PF00096.16.ls: domain 3 of 22, from 446 to 468: score 37.1, E = 5.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+++ L +H+r+H hk00353 446 YKCN-ECGKAFSQSAYLLNHQRIH 468 PF00096.16.ls: domain 4 of 22, from 474 to 496: score 32.4, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F r+s L Hlr+H hk00353 474 YKCK-ECGKGFYRHSGLIIHLRRH 496 PF00096.16.fs: domain 4 of 22, from 474 to 496: score 30.4, E = 2.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F r+s L Hlr+H hk00353 474 YKCK-ECGKGFYRHSGLIIHLRRH 496 PF00096.16.fs: domain 5 of 22, from 502 to 524: score 33.6, E = 4.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+++ L H+r H hk00353 502 YKCN-ECGKVFSQNAYLIDHQRLH 524 PF00096.16.ls: domain 5 of 22, from 502 to 524: score 35.5, E = 1.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+++ L H+r H hk00353 502 YKCN-ECGKVFSQNAYLIDHQRLH 524 PF00096.16.ls: domain 6 of 22, from 530 to 552: score 28.6, E = 2.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F k++L H+r+H hk00353 530 YKCN-KCQKAFILKKSLILHQRIH 552 PF00096.16.fs: domain 6 of 22, from 530 to 552: score 26.6, E = 2.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F k++L H+r+H hk00353 530 YKCN-KCQKAFILKKSLILHQRIH 552 PF00096.16.ls: domain 7 of 22, from 558 to 580: score 32.9, E = 1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F + L H+r H hk00353 558 YKCD-ECGKTFAQTTYLIDHQRLH 580 PF00096.16.fs: domain 7 of 22, from 558 to 580: score 30.9, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F + L H+r H hk00353 558 YKCD-ECGKTFAQTTYLIDHQRLH 580 PF00096.16.ls: domain 8 of 22, from 586 to 608: score 34.1, E = 4.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F r+++L H+r+H hk00353 586 YKCK-ECGKVFIRSKSLLLHQRVH 608 PF00096.16.fs: domain 8 of 22, from 586 to 608: score 32.2, E = 9.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F r+++L H+r+H hk00353 586 YKCK-ECGKVFIRSKSLLLHQRVH 608 PF00096.16.fs: domain 9 of 22, from 614 to 636: score 28.2, E = 9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk Fs+ksn+ H+r+H hk00353 614 FGCK-KCGKIFSSKSNFIDHKRMH 636 PF00096.16.ls: domain 9 of 22, from 614 to 636: score 30.1, E = 7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk Fs+ksn+ H+r+H hk00353 614 FGCK-KCGKIFSSKSNFIDHKRMH 636 PF00096.16.ls: domain 10 of 22, from 642 to 664: score 34.4, E = 3.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++++ L H+r H hk00353 642 YKCT-ECGKAFTQSAYLFDHQRLH 664 PF00096.16.fs: domain 10 of 22, from 642 to 664: score 32.4, E = 8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++++ L H+r H hk00353 642 YKCT-ECGKAFTQSAYLFDHQRLH 664 PF00096.16.ls: domain 11 of 22, from 670 to 692: score 29.9, E = 8.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F k++L H+r H hk00353 670 YECN-ECGKVFILKKSLILHQRFH 692 PF00096.16.fs: domain 11 of 22, from 670 to 692: score 28.0, E = 1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F k++L H+r H hk00353 670 YECN-ECGKVFILKKSLILHQRFH 692 PF00096.16.fs: domain 12 of 22, from 698 to 720: score 29.7, E = 3.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F ++ nL H r H hk00353 698 YECK-DCGKVFGSNRNLIDHERLH 720 PF00096.16.ls: domain 12 of 22, from 698 to 720: score 31.7, E = 2.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F ++ nL H r H hk00353 698 YECK-DCGKVFGSNRNLIDHERLH 720 PF00096.16.ls: domain 13 of 22, from 726 to 748: score 27.3, E = 5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F ++++ H++ H hk00353 726 YECR-ECGKTFIMSKSFMVHQKLH 748 PF00096.16.fs: domain 13 of 22, from 726 to 748: score 25.3, E = 4.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F ++++ H++ H hk00353 726 YECR-ECGKTFIMSKSFMVHQKLH 748 PF00096.16.ls: domain 14 of 22, from 754 to 776: score 36.7, E = 7.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgk+Fs +s+L H+r+H hk00353 754 YKCE-DCGKAFSYNSSLLVHRRIH 776 PF00096.16.fs: domain 14 of 22, from 754 to 776: score 34.8, E = 2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgk+Fs +s+L H+r+H hk00353 754 YKCE-DCGKAFSYNSSLLVHRRIH 776 PF00096.16.ls: domain 15 of 22, from 782 to 804: score 33.4, E = 7.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++Fs++ nL H+r+H hk00353 782 FECS-ECGRAFSSNRNLIEHKRIH 804 PF00096.16.fs: domain 15 of 22, from 782 to 804: score 31.5, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++Fs++ nL H+r+H hk00353 782 FECS-ECGRAFSSNRNLIEHKRIH 804 PF00096.16.ls: domain 16 of 22, from 810 to 832: score 30.1, E = 7.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F k++L H+r+H hk00353 810 YECD-ECGKCFILKKSLIGHQRIH 832 PF00096.16.fs: domain 16 of 22, from 810 to 832: score 28.1, E = 9.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F k++L H+r+H hk00353 810 YECD-ECGKCFILKKSLIGHQRIH 832 PF00096.16.fs: domain 17 of 22, from 838 to 860: score 38.6, E = 2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgk+Fs +snL +H+r+H hk00353 838 YKCN-DCGKVFSYRSNLIAHQRIH 860 PF00096.16.ls: domain 17 of 22, from 838 to 860: score 40.6, E = 5.1e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgk+Fs +snL +H+r+H hk00353 838 YKCN-DCGKVFSYRSNLIAHQRIH 860 PF00096.16.ls: domain 18 of 22, from 866 to 888: score 33.2, E = 8.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F+ + nL H+r+H hk00353 866 YACS-ECGKGFTYNRNLIEHQRIH 888 PF00096.16.fs: domain 18 of 22, from 866 to 888: score 31.2, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F+ + nL H+r+H hk00353 866 YACS-ECGKGFTYNRNLIEHQRIH 888 PF00096.16.ls: domain 19 of 22, from 894 to 916: score 28.2, E = 2.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+ +++ nL H+r+H hk00353 894 YECH-VCRKVLTSSRNLMVHQRIH 916 PF00096.16.fs: domain 19 of 22, from 894 to 916: score 26.3, E = 2.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+ +++ nL H+r+H hk00353 894 YECH-VCRKVLTSSRNLMVHQRIH 916 PF00096.16.ls: domain 20 of 22, from 922 to 944: score 35.7, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fs+++nL H+r+H hk00353 922 YKCN-ECGKDFSQNKNLVVHQRMH 944 PF00096.16.fs: domain 20 of 22, from 922 to 944: score 33.8, E = 3.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fs+++nL H+r+H hk00353 922 YKCN-ECGKDFSQNKNLVVHQRMH 944 PF00096.16.fs: domain 21 of 22, from 950 to 972: score 30.3, E = 2.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C ksF++k nL H+r+H hk00353 950 YECD-KCRKSFTSKRNLVGHQRIH 972 PF00096.16.ls: domain 21 of 22, from 950 to 972: score 32.2, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C ksF++k nL H+r+H hk00353 950 YECD-KCRKSFTSKRNLVGHQRIH 972 PF00096.16.fs: domain 22 of 22, from 978 to 1000: score 30.1, E = 3.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ dC k+F++++nL+ H+++H hk00353 978 YGCN-DCSKVFRQRKNLTVHQKIH 1000 PF00096.16.ls: domain 22 of 22, from 978 to 1000: score 32.0, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ dC k+F++++nL+ H+++H hk00353 978 YGCN-DCSKVFRQRKNLTVHQKIH 1000 //