hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-17310896/chunk_1/iprscan-20090525-17310896.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk00353 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 608.3 2.6e-178 22 SM00431 273.5 1.6e-77 1 SM00349 70.5 2.1e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00431 1/1 58 170 .. 1 113 [] 273.5 1.6e-77 SM00349 1/1 237 293 .. 1 62 [] 70.5 2.1e-16 SM00355 1/22 390 412 .. 1 23 [] 20.0 0.34 SM00355 2/22 418 440 .. 1 23 [] 28.0 0.0013 SM00355 3/22 446 468 .. 1 23 [] 30.1 0.0003 SM00355 4/22 474 496 .. 1 23 [] 28.9 0.00072 SM00355 5/22 502 524 .. 1 23 [] 29.6 0.00043 SM00355 6/22 530 552 .. 1 23 [] 26.3 0.0042 SM00355 7/22 558 580 .. 1 23 [] 28.6 0.00084 SM00355 8/22 586 608 .. 1 23 [] 30.3 0.00026 SM00355 9/22 614 636 .. 1 23 [] 26.8 0.0029 SM00355 10/22 642 664 .. 1 23 [] 28.5 0.00095 SM00355 11/22 670 692 .. 1 23 [] 26.0 0.0052 SM00355 12/22 698 720 .. 1 23 [] 27.5 0.0018 SM00355 13/22 726 748 .. 1 23 [] 23.7 0.025 SM00355 14/22 754 776 .. 1 23 [] 28.1 0.0012 SM00355 15/22 782 804 .. 1 23 [] 29.9 0.00034 SM00355 16/22 810 832 .. 1 23 [] 26.1 0.005 SM00355 17/22 838 860 .. 1 23 [] 31.6 0.00011 SM00355 18/22 866 888 .. 1 23 [] 28.5 0.00092 SM00355 19/22 894 916 .. 1 23 [] 24.5 0.015 SM00355 20/22 922 944 .. 1 23 [] 29.5 0.00047 SM00355 21/22 950 972 .. 1 23 [] 29.4 0.00048 SM00355 22/22 978 1000 .. 1 23 [] 26.4 0.0039 Alignments of top-scoring domains: SM00431: domain 1 of 1, from 58 to 170: score 273.5, E = 1.6e-77 *->pEifRqrFRqFrYqEtsGPREALSRLRELCrqWLRPElhTKEQILEL +E+++++FRq+rY+EtsGP+EALSRLRELCr+WLRPE +TK+QILEL hk00353 58 WETSHLHFRQLRYHETSGPQEALSRLRELCRRWLRPEARTKAQILEL 104 LVLEQFLTILPgELQaWVrehhPeSGEEAVtLlEdLereLdepgqqVsah LVLEQFL+ILPgE+++WV+ hhP+SGEEAV+L+E+L+++Ld+p+ qV+++ hk00353 105 LVLEQFLSILPGEIRTWVQLHHPGSGEEAVALVEELQKDLDGPAIQVPVL 154 vhgqevLleemvplga<-* v++q++L+++++ +g+ hk00353 155 VKDQDTLQKVVSAPGT 170 SM00349: domain 1 of 1, from 237 to 293: score 70.5, E = 2.1e-16 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk V Fe V V+F+ EEW +L p Qr+LY+dVMlENY+n++SL+ ++ + hk00353 237 VMFEEVSVCFTSEEWACLGPIQRALYWDVMLENYGNVTSLE-WETMT 282 p.dliskLEqgeEpwi<-* +++++ + p + hk00353 283 EnEEVTSK-----PSS 293 SM00355: domain 1 of 22, from 390 to 412: score 20.0, E = 0.34 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C k+f+ ++L++H r+H hk00353 390 YKCDM-CCKHFNKIsHLINHRRIH 412 SM00355: domain 2 of 22, from 418 to 440: score 28.0, E = 0.0013 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk f ++++L H+r H hk00353 418 HKCKE-CGKGFIQRsSLLMHLRNH 440 SM00355: domain 3 of 22, from 446 to 468: score 30.1, E = 0.0003 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+ L +H+r+H hk00353 446 YKCNE-CGKAFSQSaYLLNHQRIH 468 SM00355: domain 4 of 22, from 474 to 496: score 28.9, E = 0.00072 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f +++ L+ H+r+H hk00353 474 YKCKE-CGKGFYRHsGLIIHLRRH 496 SM00355: domain 5 of 22, from 502 to 524: score 29.6, E = 0.00043 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+fs+ L+ H+r H hk00353 502 YKCNE-CGKVFSQNaYLIDHQRLH 524 SM00355: domain 6 of 22, from 530 to 552: score 26.3, E = 0.0042 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C+k f k++L+ H+r+H hk00353 530 YKCNK-CQKAFILKkSLILHQRIH 552 SM00355: domain 7 of 22, from 558 to 580: score 28.6, E = 0.00084 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f + + L+ H+r H hk00353 558 YKCDE-CGKTFAQTtYLIDHQRLH 580 SM00355: domain 8 of 22, from 586 to 608: score 30.3, E = 0.00026 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f + ++L H+rvH hk00353 586 YKCKE-CGKVFIRSkSLLLHQRVH 608 SM00355: domain 9 of 22, from 614 to 636: score 26.8, E = 0.0029 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cgk fssk++++ H r+H hk00353 614 FGCKK-CGKIFSSKsNFIDHKRMH 636 SM00355: domain 10 of 22, from 642 to 664: score 28.5, E = 0.00095 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ L H+r H hk00353 642 YKCTE-CGKAFTQSaYLFDHQRLH 664 SM00355: domain 11 of 22, from 670 to 692: score 26.0, E = 0.0052 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+f k++L+ H+r H hk00353 670 YECNE-CGKVFILKkSLILHQRFH 692 SM00355: domain 12 of 22, from 698 to 720: score 27.5, E = 0.0018 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cgk+f s ++L+ H r H hk00353 698 YECKD-CGKVFGSNrNLIDHERLH 720 SM00355: domain 13 of 22, from 726 to 748: score 23.7, E = 0.025 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk+f +++ H++ H hk00353 726 YECRE-CGKTFIMSkSFMVHQKLH 748 SM00355: domain 14 of 22, from 754 to 776: score 28.1, E = 0.0012 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC+ Cgk fs ++L H r+H hk00353 754 YKCED-CGKAFSYNsSLLVHRRIH 776 SM00355: domain 15 of 22, from 782 to 804: score 29.9, E = 0.00034 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cg+ fss ++L++H r+H hk00353 782 FECSE-CGRAFSSNrNLIEHKRIH 804 SM00355: domain 16 of 22, from 810 to 832: score 26.1, E = 0.005 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+f k++L+ H+r+H hk00353 810 YECDE-CGKCFILKkSLIGHQRIH 832 SM00355: domain 17 of 22, from 838 to 860: score 31.6, E = 0.00011 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC+ Cgk+fs +++L+ H+r+H hk00353 838 YKCND-CGKVFSYRsNLIAHQRIH 860 SM00355: domain 18 of 22, from 866 to 888: score 28.5, E = 0.00092 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f+ ++L++H+r+H hk00353 866 YACSE-CGKGFTYNrNLIEHQRIH 888 SM00355: domain 19 of 22, from 894 to 916: score 24.5, E = 0.015 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C k+ +s ++L H+r+H hk00353 894 YECHV-CRKVLTSSrNLMVHQRIH 916 SM00355: domain 20 of 22, from 922 to 944: score 29.5, E = 0.00047 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+ ++L+ H+r+H hk00353 922 YKCNE-CGKDFSQNkNLVVHQRMH 944 SM00355: domain 21 of 22, from 950 to 972: score 29.4, E = 0.00048 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C ksf+sk++L+ H+r+H hk00353 950 YECDK-CRKSFTSKrNLVGHQRIH 972 SM00355: domain 22 of 22, from 978 to 1000: score 26.4, E = 0.0039 *->ykCpigCgksfssk.aLkrHmrvH<-* y C+ C+k+f+++++L+ H+++H hk00353 978 YGCND-CSKVFRQRkNLTVHQKIH 1000 //