hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-16054893/chunk_1/iprscan-20090618-16054893.nocrc
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Query sequence: hk00381
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01566.9.ls Natural resistance-associated macrophage pro   887.7   5.1e-264   1
PF01566.9.fs Natural resistance-associated macrophage pro   885.8   1.9e-263   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01566.9.fs   1/1     103   487 ..     1   414 []   885.8 1.9e-263
PF01566.9.ls   1/1     103   487 ..     1   414 []   887.7 5.1e-264

Alignments of top-scoring domains:
PF01566.9.fs: domain 1 of 1, from 103 to 487: score 885.8, E = 1.9e-263
                   *->yetdlqAGAqagYkLLWVlLwanimAlLlQrLSArLGvVTGkdLAEv
                      +e+dlq+GA+ag+kLLW+lL+a++++lLlQrL+ArLGvVTG++LAEv
     hk00381   103    IESDLQSGAVAGFKLLWILLLATLVGLLLQRLAARLGVVTGLHLAEV 149  

                   CreeYPrpvriiLWlmaElAIIAtDiaEVIGTAIAlklLfkGriPLwgGV
                   C+++YP+++r+iLWlm+ElAII++D++EVIG+AIA++lL+ GriPLwgGV
     hk00381   150 CHRQYPKVPRVILWLMVELAIIGSDMQEVIGSAIAINLLSVGRIPLWGGV 199  

                   lITivDtflfLflqkPgSryGiRkLEavvglLilvmAisFavelfvvkPs
                   lITi Dtf+fLfl+    +yG+RkLEa++g+Li++mA++F++e++ vkPs
     hk00381   200 LITIADTFVFLFLD----KYGLRKLEAFFGFLITIMALTFGYEYVTVKPS 245  

                   akeVlkGlFvPslsgfgsealllAiGIlGAtVMPHnlYLHSaLVqsRlvd
                   +++VlkG+FvPs+sg++++++ +A+GI+GA++MPHn+YLHSaLV+sR+v+
     hk00381   246 QSQVLKGMFVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVN 295  

                   rdakrGnYtvaeesDekkvNYRPsleaikealrYfliEsaIALftvAffv
                   r++k+                     +++ea++Yf+iEs+IALf v+f++
     hk00381   296 RNNKQ---------------------EVREANKYFFIESCIALF-VSFII 323  

                   NlavliVaAagfygstnadvadlcsayslssdAdifP.nnelvnvDiYkg
                   N++v++V+A++f+g+tn++v+++c++ s s++A +fP++n++++vDiYkg
     hk00381   324 NVFVVSVFAEAFFGKTNEQVVEVCTNTS-SPHAGLFPkDNSTLAVDIYKG 372  

                   glylglsfgavaaAatiFavGLLAsGQSStivGTyAGQfVMeGFLnwklp
                   g++lg++fg  +aA++i+avG+LA+GQSSt++GTy+GQfVMeGFLn+k++
     hk00381   373 GVVLGCYFG--PAALYIWAVGILAAGQSSTMTGTYSGQFVMEGFLNLKWS 420  

                   pWlRrliTRsiAIiPtLivalfgggesdltraLvlsqVvLSfqLPFAliP
                   +++R+++TRsiAIiPtL+va+f++ +++lt+++++++V++S+qLPFAliP
     hk00381   421 RFARVVLTRSIAIIPTLLVAVFQD-VEHLTGMNDFLNVLQSLQLPFALIP 469  

                   LitFTSsrkiMgefvnsk<-*
                   ++tFTS r++M +f+n++   
     hk00381   470 ILTFTSLRPVMSDFANGL    487  

PF01566.9.ls: domain 1 of 1, from 103 to 487: score 887.7, E = 5.1e-264
                   *->yetdlqAGAqagYkLLWVlLwanimAlLlQrLSArLGvVTGkdLAEv
                      +e+dlq+GA+ag+kLLW+lL+a++++lLlQrL+ArLGvVTG++LAEv
     hk00381   103    IESDLQSGAVAGFKLLWILLLATLVGLLLQRLAARLGVVTGLHLAEV 149  

                   CreeYPrpvriiLWlmaElAIIAtDiaEVIGTAIAlklLfkGriPLwgGV
                   C+++YP+++r+iLWlm+ElAII++D++EVIG+AIA++lL+ GriPLwgGV
     hk00381   150 CHRQYPKVPRVILWLMVELAIIGSDMQEVIGSAIAINLLSVGRIPLWGGV 199  

                   lITivDtflfLflqkPgSryGiRkLEavvglLilvmAisFavelfvvkPs
                   lITi Dtf+fLfl+    +yG+RkLEa++g+Li++mA++F++e++ vkPs
     hk00381   200 LITIADTFVFLFLD----KYGLRKLEAFFGFLITIMALTFGYEYVTVKPS 245  

                   akeVlkGlFvPslsgfgsealllAiGIlGAtVMPHnlYLHSaLVqsRlvd
                   +++VlkG+FvPs+sg++++++ +A+GI+GA++MPHn+YLHSaLV+sR+v+
     hk00381   246 QSQVLKGMFVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVN 295  

                   rdakrGnYtvaeesDekkvNYRPsleaikealrYfliEsaIALftvAffv
                   r++k+                     +++ea++Yf+iEs+IALf v+f++
     hk00381   296 RNNKQ---------------------EVREANKYFFIESCIALF-VSFII 323  

                   NlavliVaAagfygstnadvadlcsayslssdAdifP.nnelvnvDiYkg
                   N++v++V+A++f+g+tn++v+++c++ s s++A +fP++n++++vDiYkg
     hk00381   324 NVFVVSVFAEAFFGKTNEQVVEVCTNTS-SPHAGLFPkDNSTLAVDIYKG 372  

                   glylglsfgavaaAatiFavGLLAsGQSStivGTyAGQfVMeGFLnwklp
                   g++lg++fg  +aA++i+avG+LA+GQSSt++GTy+GQfVMeGFLn+k++
     hk00381   373 GVVLGCYFG--PAALYIWAVGILAAGQSSTMTGTYSGQFVMEGFLNLKWS 420  

                   pWlRrliTRsiAIiPtLivalfgggesdltraLvlsqVvLSfqLPFAliP
                   +++R+++TRsiAIiPtL+va+f++ +++lt+++++++V++S+qLPFAliP
     hk00381   421 RFARVVLTRSIAIIPTLLVAVFQD-VEHLTGMNDFLNVLQSLQLPFALIP 469  

                   LitFTSsrkiMgefvnsk<-*
                   ++tFTS r++M +f+n++   
     hk00381   470 ILTFTSLRPVMSDFANGL    487  

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