hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-20105264/chunk_1/iprscan-20080812-20105264.nocrc
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Query sequence: hk00560
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF02776.8.fs Thiamine pyrophosphate enzyme, N-termina    99.1      3e-28   2
PF02776.8.ls Thiamine pyrophosphate enzyme, N-termina    83.6    5.6e-22   1
PF00205.12.fs Thiamine pyrophosphate enzyme, central d    63.8    1.9e-17   1
PF00205.12.ls Thiamine pyrophosphate enzyme, central d    54.2    3.9e-13   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF02776.8.fs   1/2      17   167 ..     1   162 [.    98.3  5.3e-28
PF02776.8.ls   1/1      17   181 ..     1   181 []    83.6  5.6e-22
PF00205.12.fs   1/1     267   374 ..     1   126 [.    63.8  1.9e-17
PF00205.12.ls   1/1     267   415 ..     1   153 []    54.2  3.9e-13

Alignments of top-scoring domains:
PF02776.8.fs: domain 1 of 2, from 17 to 167: score 98.3, E = 5.3e-28
                   *->atgadylverLeqqGVdtvFGvPGgaiLpllDaLyaeespgirhilc
                       +g++ ++ +L+++GV+ +F  +Gg i pll a       gir + +
     hk00560    17    RHGGENVAAVLRAHGVRFIFTLVGGHISPLLVACEK---LGIRVVDT 60   

                   RHEqgAayAAdGYARatGKpGVclvTSGPGatNlvtGiAdAyadsvPvva
                   RHE  A++AAd++AR++G +GV++vT GPG tN vt+  +A +   P ++
     hk00560    61 RHEVTAVFAADAMARLSGTVGVAAVTAGPGLTNTVTAVKNAQMAQSPILL 110  

                   ItGqvgrsdqakghIghdaFQEvDityfvgisrpitKhsylvtspediPr
                   + G+ ++        + +a+Q vD+   + ++rp +K+++ v+++ di  
     hk00560   111 LGGAASTLL-----QNRGALQAVDQ---LSLFRPLCKFCVSVRRVRDIVP 152  

                   iideAfrtAlsGRpG<-*
                    +  A+ +A sG+pG   
     hk00560   153 TLRAAMAAAQSGTPG    167  

PF02776.8.ls: domain 1 of 1, from 17 to 181: score 83.6, E = 5.6e-22
                   *->atgadylverLeqqGVdtvFGvPGgaiLpllDaLyaeespgirhilc
                       +g++ ++ +L+++GV+ +F  +Gg i pll a       gir + +
     hk00560    17    RHGGENVAAVLRAHGVRFIFTLVGGHISPLLVACEK---LGIRVVDT 60   

                   RHEqgAayAAdGYARatGKpGVclvTSGPGatNlvtGiAdAyadsvPvva
                   RHE  A++AAd++AR++G +GV++vT GPG tN vt+  +A +   P ++
     hk00560    61 RHEVTAVFAADAMARLSGTVGVAAVTAGPGLTNTVTAVKNAQMAQSPILL 110  

                   ItGqvgrsdqakghIghdaFQEvDityfvgisrpitKhsylvtspediPr
                   + G+ ++        + +a+Q vD+   + ++rp +K+++ v+++ di  
     hk00560   111 LGGAASTLL-----QNRGALQAVDQ---LSLFRPLCKFCVSVRRVRDIVP 152  

                   iideAfrtAlsGRpGPVyvdlPkDvadaeapaes<-*
                    +  A+ +A sG+p   + +    v + +a ae+   
     hk00560   153 TLRAAMAAAQSGTP-GRWRM----VMLSSAGAEG    181  

PF00205.12.fs: domain 1 of 1, from 267 to 374: score 63.8, E = 1.9e-17
                   *->iekAaelLaaAkrPvilaGgGvrrsegAseeLreLAEklgiPVvtTl
                      +++ +e+L++AkrP++++G  +++ +  ++ Lr+ +E+lg P +   
     hk00560   267    VQRCVEILSRAKRPLMVLGSQALLTPTSADKLRAAVETLGVPCFLGG 313  

                   mGkGafpedHPlyelGvmlGmhGltpaaneal.eeADLvlavGaRFfddi
                   m++G++  +HPl+            ++ + a+ ++AD++++ G+   d++
     hk00560   314 MARGLLGRNHPLH-----------IRENRSAAlKKADVIVLAGTV-CDFR 351  

                   rttGyklpiefaPnfWaakiIhiDiDpaei<-*
                   +++G     +   +    kiI ++ +++e+   
     hk00560   352 LSYG-----RVLSH--SSKIIIVNRNREEM    374  

PF00205.12.ls: domain 1 of 1, from 267 to 415: score 54.2, E = 3.9e-13
                   *->iekAaelLaaAkrPvilaGgGvrrsegAseeLreLAEklgiPVvtTl
                      +++ +e+L++AkrP++++G  +++ +  ++ Lr+ +E+lg P +   
     hk00560   267    VQRCVEILSRAKRPLMVLGSQALLTPTSADKLRAAVETLGVPCFLGG 313  

                   mGkGafpedHPlyelGvmlGmhGltpaaneal.eeADLvlavGaRFfddi
                   m++G++  +HPl+            ++ + a+ ++AD++++ G+   d++
     hk00560   314 MARGLLGRNHPLH-----------IRENRSAAlKKADVIVLAGTV-CDFR 351  

                   rttGyklpiefaPnfWaakiIhiDiDpaeigknydp..pngrvdvpivGD
                   +++G     +   +    kiI ++ +++e+  n d+  +   +  +++G 
     hk00560   352 LSYG-----RVLSH--SSKIIIVNRNREEMLLNSDIfwK---PQEAVQGE 391  

                   akme................aLeaL<-*
                   +   ++ +   ++++++++     L   
     hk00560   392 PL-NppvhicappspsppgfCCSWL    415  

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