hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-20163835/chunk_1/iprscan-20080812-20163835.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hk00579
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00069.15.ls Protein kinase domain                       296.0    6.3e-86   1
PF00069.15.fs Protein kinase domain                       294.1    2.4e-85   1
PF07714.7.fs Protein tyrosine kinase                      38.5    4.5e-11   2

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00069.15.fs   1/1     150   434 ..     1   287 []   294.1  2.4e-85
PF07714.7.fs   1/2     150   213 ..     1    71 [.    17.5  5.4e-05
PF00069.15.ls   1/1     150   434 ..     1   287 []   296.0  6.3e-86
PF07714.7.fs   2/2     258   347 ..   120   215 ..    21.0  5.4e-06

Alignments of top-scoring domains:
PF00069.15.fs: domain 1 of 1, from 150 to 434: score 294.1, E = 2.4e-85
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      y+ l+++GsG++G+V+ a + +tg +VAvK+++++ ++    k+  r
     hk00579   150    YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYR 196  

                   lsEiqilkrLsHpNIvrlidvfed......kdhlylVlEycegGLrvldL
                     E+++lk+++H+N++ l+dvf+  ++ ++ +++ylV+ +++      dL
     hk00579   197 --ELRLLKHMKHENVIGLLDVFTParsleeFNDVYLVTHLMGA-----DL 239  

                   fdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNIL
                     +++      +l  ++d++++ ++Qilrgl+Y+Hs  iiHRDLKP+N+ 
     hk00579   240 NNIVK----CQKL--TDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLA 283  

                   ldnngvvdaflKiaDFGlAkklst.ssslttfvGTpwYmAPEvllggngy
                   +++++++    Ki DFGlA+   ++ +++t++v T+wY+APE+ l   +y
     hk00579   284 VNEDCEL----KILDFGLAR---HtDDEMTGYVATRWYRAPEIMLNWMHY 326  

                   gtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefds
                    + vD+WS+G+i++elltG+++F+g    ++++qlq i +  g+p     
     hk00579   327 NQTVDIWSVGCIMAELLTGRTLFPGT---DhINQLQQIMRLTGTP----P 369  

                   pewdsisrse.fr..............r.l.pnlseeakdLikkcLnkDP
                    + +++++s++ r+  ++ ++ ++ +  ++ + +++ a dL++k+L +D 
     hk00579   370 AYLINRMPSHeARnyiqsltqmpkmnfAnVfIGANPLAVDLLEKMLVLDS 419  

                   skRltaeeilqHPwf<-*
                    kR+ta+++l H +f   
     hk00579   420 DKRITAAQALAHAYF    434  

PF07714.7.fs: domain 1 of 2, from 150 to 213: score 17.5, E = 5.4e-05
                   *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLke.igaseeei
                       + +   G+Ga+G+V+ +  +    +t++ VAVK+L  ++++  ++ 
     hk00579   150    YQNLSPVGSGAYGSVCAAFDT----KTGLRVAVKKLSRpFQSIIHA- 191  

                   eredFlrEAsiMkklGdHpNiVrLl<-*
                     +   rE++++k++ +H+N++ Ll   
     hk00579   192 --KRTYRELRLLKHM-KHENVIGLL    213  

PF00069.15.ls: domain 1 of 1, from 150 to 434: score 296.0, E = 6.3e-86
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      y+ l+++GsG++G+V+ a + +tg +VAvK+++++ ++    k+  r
     hk00579   150    YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYR 196  

                   lsEiqilkrLsHpNIvrlidvfed......kdhlylVlEycegGLrvldL
                     E+++lk+++H+N++ l+dvf+  ++ ++ +++ylV+ +++      dL
     hk00579   197 --ELRLLKHMKHENVIGLLDVFTParsleeFNDVYLVTHLMGA-----DL 239  

                   fdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNIL
                     +++      +l  ++d++++ ++Qilrgl+Y+Hs  iiHRDLKP+N+ 
     hk00579   240 NNIVK----CQKL--TDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLA 283  

                   ldnngvvdaflKiaDFGlAkklst.ssslttfvGTpwYmAPEvllggngy
                   +++++++    Ki DFGlA+   ++ +++t++v T+wY+APE+ l   +y
     hk00579   284 VNEDCEL----KILDFGLAR---HtDDEMTGYVATRWYRAPEIMLNWMHY 326  

                   gtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefds
                    + vD+WS+G+i++elltG+++F+g    ++++qlq i +  g+p     
     hk00579   327 NQTVDIWSVGCIMAELLTGRTLFPGT---DhINQLQQIMRLTGTP----P 369  

                   pewdsisrse.fr..............r.l.pnlseeakdLikkcLnkDP
                    + +++++s++ r+  ++ ++ ++ +  ++ + +++ a dL++k+L +D 
     hk00579   370 AYLINRMPSHeARnyiqsltqmpkmnfAnVfIGANPLAVDLLEKMLVLDS 419  

                   skRltaeeilqHPwf<-*
                    kR+ta+++l H +f   
     hk00579   420 DKRITAAQALAHAYF    434  

PF07714.7.fs: domain 2 of 2, from 258 to 347: score 21.0, E = 5.4e-06
                   *->lQiAkGMeYLesknfvHRDLAARNcLVsenlvVKIsDFGLaRdiynd
                      +Qi +G+ Y +s  ++HRDL   N  V+e+   KI DFGLaR   +d
     hk00579   258    YQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHT-DD 303  

                   dyY.vrkkgggklPvkWm.APEslkygk.FtskSDVWSFGVlLWEiftlG
                   +  +++++       +W++APE + +  +++   D+WS G+ + E++t G
     hk00579   304 EMTgYVAT-------RWYrAPEIMLNWMhYNQTVDIWSVGCIMAELLT-G 345  

                   eq<-*
                   ++   
     hk00579   346 RT    347  

//