hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-20163835/chunk_1/iprscan-20080812-20163835.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hk00579
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 317.4    9.8e-91   1
SM00219                                                  13.9    5.4e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1     150   434 ..     1   280 []    13.9  5.4e-12
SM00220    1/1     150   434 ..     1   231 []   317.4  9.8e-91

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 150 to 434: score 13.9, E = 5.4e-12
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.....keeFlr
                       + +   G+Ga+G V+ +  +++++ VAVK+L    ++  + +  +r
     hk00579   150    YQNLSPVGSGAYGSVCAAFDTktgLRVAVKKLSRPFqsiihAKRTYR 196  

                   EakiMkklGgkHpNiVkLlGvcteegrr....FmevePlmivmEymegGd
                   E++++k+   kH+N++ Ll v t    r+ ++F     +++v+ +m   d
     hk00579   197 ELRLLKHM--KHENVIGLLDVFTPA--RsleeF---NDVYLVTHLMGA-D 238  

                   LldyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvge
                   L++  +  +  l+ ++     +QI +G  Y++s  ++HRDL   N  v+e
     hk00579   239 LNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNE 286  

                   nkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWm.APEs
                   +   KI DFGL+R  +d+        +        g   +  rW++APE 
     hk00579   287 DCELKILDFGLARHTDDE--------MT-------GY--VATRWYrAPEI 319  

                   l.kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkk
                   + +   ++   D+WS G  + E++t G +  pg        ++ +++l++
     hk00579   320 MlNWMHYNQTVDIWSVGCIMAELLT-GRTLFPG--------TDHINQLQQ 360  

                   GyRlpkPendl..p.iS......................svtCPdelYdl
                    +Rl   + ++   ++ +++ ++  ++ ++ ++ +  + + ++ +   dl
     hk00579   361 IMRLTGTPPAYliNrMPshearnyiqsltqmpkmnfanvFIGANPLAVDL 410  

                   MlqCWaedPedRPtFsel..verl<-*
                    ++    d ++R t ++   + ++   
     hk00579   411 LEKMLVLDSDKRITAAQAlaHAYF    434  

SM00220: domain 1 of 1, from 150 to 434: score 317.4, E = 9.8e-91
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr
                      Y+ l ++G+Ga+G+V+ a d+ktg +vA+K+++++ ++  + +r++r
     hk00579   150    YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSrpfqsiihaKRTYR 196  

                   EikiLkk.dHPNIVkLydvfed.......dklylVmEyceGdlGdLfdll
                   E+++Lk+ +H+N++ L+dvf   ++ ++ +++ylV+ +++    dL  + 
     hk00579   197 ELRLLKHmKHENVIGLLDVFTParsleefNDVYLVTHLMGA---DLNNIV 243  

                   kkrgrrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds
                   k ++       l+ ++++f+++Qil++L+Y+Hs  IiHRDLKP+N+ +++
     hk00579   244 KCQK-------LTDdHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNE 286  

                   ..hvKlaDFGlArql....ttfvGTpeYmAPEvl....gYgkpavDiWSl
                   + ++K+ DFGlAr+ +++ t +v T++Y+APE++ +  +Y+   vDiWS+
     hk00579   287 dcELKILDFGLARHTddemTGYVATRWYRAPEIMlnwmHYNQ-TVDIWSV 335  

                   GcilyElltGkpPFp......qldlifkkig...................
                   Gci++ElltG+++Fp++++ +ql++i+++ g+++ +  ++ ++++ +++ 
     hk00579   336 GCIMAELLTGRTLFPgtdhinQLQQIMRLTGtppaylinrmpshearnyi 385  

                   ..................SpeakdLikklLvkdPekRlta.eaLedeldi
                    + +  ++ +  +   +  p a dL++k+Lv d +kR+ta +aL+     
     hk00579   386 qsltqmpkmnfanvfigaNPLAVDLLEKMLVLDSDKRITAaQALA----- 430  

                   kaHPff<-*
                     H +f   
     hk00579   431 --HAYF    434  

//