hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-20274680/chunk_1/iprscan-20080812-20274680.nocrc
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Query sequence: hk00816
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       136.3    7.9e-38   5
PF00400.22.fs WD domain, G-beta repeat                       133.0    7.6e-37   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.ls   1/5     277   316 ..     1    38 []    41.6  2.6e-09
PF00400.22.fs   1/5     277   316 ..     1    38 []    39.6  3.6e-10
PF00400.22.ls   2/5     321   359 ..     1    38 []    41.5  2.7e-09
PF00400.22.fs   2/5     321   359 ..     1    38 []    39.5  3.6e-10
PF00400.22.fs   3/5     363   403 ..     1    38 []    19.0  0.00021
PF00400.22.ls   4/5     407   445 ..     1    38 []    32.1  1.8e-06
PF00400.22.fs   4/5     407   445 ..     1    38 []    30.1  1.6e-07

Alignments of top-scoring domains:
PF00400.22.ls: domain 1 of 5, from 277 to 316: score 41.6, E = 2.6e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +++++v++gHt++V++v+  p sg+ll+s+S D++ik+W+   
     hk00816   277    KKQIhVWsGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWE    316  

PF00400.22.fs: domain 1 of 5, from 277 to 316: score 39.6, E = 3.6e-10
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +++++v++gHt++V++v+  p sg+ll+s+S D++ik+W+   
     hk00816   277    KKQIhVWsGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWE    316  

PF00400.22.ls: domain 2 of 5, from 321 to 359: score 41.5, E = 2.7e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      + c++++ gH+++V++++f+   g++++s+  D+ +k+Wd   
     hk00816   321    RRCLrTFiGHSKAVRDICFNTA-GTQFLSAAYDRYLKLWD    359  

PF00400.22.fs: domain 2 of 5, from 321 to 359: score 39.5, E = 3.6e-10
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      + c++++ gH+++V++++f+   g++++s+  D+ +k+Wd   
     hk00816   321    RRCLrTFiGHSKAVRDICFNTA-GTQFLSAAYDRYLKLWD    359  

PF00400.22.fs: domain 3 of 5, from 363 to 403: score 19.0, E = 0.00021
                   *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-*
                      g+c++ ++   +  +cv+f+pd++ ++l++ g +D++i  Wd   
     hk00816   363    GQCIsRFtNR-KVPYCVKFNPDedKQNLFVAGMSDKKIVQWD    403  

PF00400.22.ls: domain 4 of 5, from 407 to 445: score 32.1, E = 1.8e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ge +++++ H ++V+ + f+ +  ++++s S+D+++++W+   
     hk00816   407    GEIVqEYdRHLGAVNTIVFVDE-NRRFVSTSDDKSLRVWE    445  

PF00400.22.fs: domain 4 of 5, from 407 to 445: score 30.1, E = 1.6e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ge +++++ H ++V+ + f+ +  ++++s S+D+++++W+   
     hk00816   407    GEIVqEYdRHLGAVNTIVFVDE-NRRFVSTSDDKSLRVWE    445  

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