hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-20274680/chunk_1/iprscan-20080812-20274680.nocrc
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Query sequence: hk00816
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 150.7    1.5e-40   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/5     276   316 ..     1    46 []    41.6  1.1e-07
SM00320    2/5     320   359 ..     1    46 []    44.2  1.7e-08
SM00320    3/5     362   403 ..     1    46 []    23.6    0.028
SM00320    4/5     406   445 ..     1    46 []    34.3  1.7e-05
SM00320    5/5     451   488 ..     1    46 []     7.1       38

Alignments of top-scoring domains:
SM00320: domain 1 of 5, from 276 to 316: score 41.6, E = 1.1e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k++++++gHt+  +V++v+  p +     ++ll+s+s D++i+lW
     hk00816   276    PkKQIHVWSGHTK--GVSAVRLFPLS-----GHLLLSCSmDCKIKLW 315  

                   d<-*
                   +   
     hk00816   316 E    316  

SM00320: domain 2 of 5, from 320 to 359: score 44.2, E = 1.7e-08
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++lrt+ gH++  +V++++f+  g      ++++s+  D+ ++lW
     hk00816   320    ErRCLRTFIGHSK--AVRDICFNTAG------TQFLSAAyDRYLKLW 358  

                   d<-*
                   d   
     hk00816   359 D    359  

SM00320: domain 3 of 5, from 362 to 403: score 23.6, E = 0.028
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+++++ ++  ++    ++v+f+pd    d+ nl+++g +D++i  W
     hk00816   362    TgQCISRFT-NRK--VPYCVKFNPDE---DKQNLFVAGMsDKKIVQW 402  

                   d<-*
                   d   
     hk00816   403 D    403  

SM00320: domain 4 of 5, from 406 to 445: score 34.3, E = 1.7e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ +++++ H g  +V+++ f + +      ++++s s+D+++r+W
     hk00816   406    SgEIVQEYDRHLG--AVNTIVFVDEN------RRFVSTSdDKSLRVW 444  

                   d<-*
                   +   
     hk00816   445 E    445  

SM00320: domain 5 of 5, from 451 to 488: score 7.1, E = 38
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + k +++ + H+      +v+ sp+g      ++la+ s D++i ++
     hk00816   451    DfKYIAEPSMHSM----PAVTLSPNG------KWLACQSmDNQILIF 487  

                   d<-*
                       
     hk00816   488 G    488  

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