hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-20333780/chunk_1/iprscan-20080812-20333780.nocrc
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Query sequence: hk01079
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    116.0      1e-31   2
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    112.1    1.1e-30   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/2      59   131 ..     1    74 []    55.0  1.1e-14
PF00076.12.ls   1/2      59   131 ..     1    74 []    57.0  5.9e-14
PF00076.12.fs   2/2     148   219 ..     1    74 []    57.1    3e-15
PF00076.12.ls   2/2     148   219 ..     1    74 []    59.0  1.4e-14

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 2, from 59 to 131: score 55.0, E = 1.1e-14
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVg +p+ ++e+dLk lF++fG+i +  + +D  + tg +kG+aF 
     hk01079    59    LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKD--PYTGMHKGCAFL 103  

                   eFedeedAekAldalnG.kelggrelrv<-*
                   ++   ++A kA  al+++k+l g    +   
     hk01079   104 TYCARDSAIKAQTALHEqKTLPGMARPI    131  

PF00076.12.ls: domain 1 of 2, from 59 to 131: score 57.0, E = 5.9e-14
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVg +p+ ++e+dLk lF++fG+i +  + +D  + tg +kG+aF 
     hk01079    59    LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKD--PYTGMHKGCAFL 103  

                   eFedeedAekAldalnG.kelggrelrv<-*
                   ++   ++A kA  al+++k+l g    +   
     hk01079   104 TYCARDSAIKAQTALHEqKTLPGMARPI    131  

PF00076.12.fs: domain 2 of 2, from 148 to 219: score 57.1, E = 3e-15
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVg L++  +eed+ +lF++fG i ++ + r      g+skG+aFV
     hk01079   148    LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG---PDGSSKGCAFV 191  

                   eFedeedAekAldalnG.kelggrelrv<-*
                   +F ++ +A++A+ al+G+++  g        
     hk01079   192 KFSSHTEAQAAIHALHGsQTMPGASSSL    219  

PF00076.12.ls: domain 2 of 2, from 148 to 219: score 59.0, E = 1.4e-14
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVg L++  +eed+ +lF++fG i ++ + r      g+skG+aFV
     hk01079   148    LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG---PDGSSKGCAFV 191  

                   eFedeedAekAldalnG.kelggrelrv<-*
                   +F ++ +A++A+ al+G+++  g        
     hk01079   192 KFSSHTEAQAAIHALHGsQTMPGASSSL    219  

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